Variant report

Variant	rs9360630
Chromosome Location	chr6:73752358-73752359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12111515	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs1418412	0.81[CEU][hapmap]
rs1418413	0.81[CEU][hapmap]
rs1935540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6453626	0.81[CEU][hapmap]
rs6453627	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs6900769	0.80[CEU][hapmap]
rs6939209	1.00[CEU][hapmap]
rs7756518	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs8180669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341396	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9351963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442881	0.89[CEU][hapmap]
rs9446827	0.83[ASW][hapmap];0.84[MKK][hapmap]
rs9446836	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73743000-73772000	Weak transcription	HSMM	muscle
2	chr6:73746400-73759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73749000-73765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73749200-73753000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73749600-73755000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:73750200-73764000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:73750400-73754600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73751200-73752800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:73751200-73755200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:73751400-73755200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:73751400-73759000	Weak transcription	Aorta	Aorta
12	chr6:73751600-73752600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:73751600-73753600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:73751800-73754600	Weak transcription	HSMMtube	muscle
15	chr6:73751800-73754800	Strong transcription	Primary B cells from cord blood	blood
16	chr6:73752200-73757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links