Variant report

Variant	rs9341835
Chromosome Location	chr6:64126180-64126181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10755410	0.81[ASN][1000 genomes]
rs10943902	1.00[JPT][hapmap]
rs1197897	0.91[JPT][hapmap]
rs1197902	1.00[JPT][hapmap]
rs1197905	1.00[JPT][hapmap]
rs1322415	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1322416	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1570315	1.00[JPT][hapmap]
rs1620671	1.00[JPT][hapmap]
rs1630182	1.00[JPT][hapmap]
rs1681942	1.00[JPT][hapmap]
rs1681946	1.00[JPT][hapmap]
rs1681947	1.00[JPT][hapmap]
rs1681957	1.00[JPT][hapmap]
rs1744135	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs1744147	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1744152	1.00[JPT][hapmap]
rs2076874	0.83[JPT][hapmap]
rs2146149	1.00[JPT][hapmap]
rs2146150	1.00[JPT][hapmap]
rs2622274	1.00[JPT][hapmap]
rs2622281	1.00[JPT][hapmap]
rs2758224	1.00[JPT][hapmap]
rs2758225	1.00[JPT][hapmap]
rs2758237	1.00[JPT][hapmap]
rs2758259	1.00[JPT][hapmap]
rs2800048	1.00[JPT][hapmap]
rs2800049	1.00[JPT][hapmap]
rs4358600	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4445042	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4543353	1.00[JPT][hapmap]
rs4710254	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4710255	0.81[ASN][1000 genomes]
rs6919709	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6929702	0.82[ASN][1000 genomes]
rs6938965	1.00[JPT][hapmap]
rs7763834	0.81[ASN][1000 genomes]
rs9294196	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9294197	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294198	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294202	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294206	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9294215	0.81[ASN][1000 genomes]
rs9294234	1.00[JPT][hapmap]
rs9341841	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344090	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344129	0.81[ASN][1000 genomes]
rs9344137	0.81[ASN][1000 genomes]
rs9352960	0.81[ASN][1000 genomes]
rs9353016	1.00[JPT][hapmap]
rs9361779	0.80[ASN][1000 genomes]
rs9361838	1.00[JPT][hapmap]
rs9449233	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9449291	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9341835	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64121800-64127200	Weak transcription	HepG2	liver

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