Variant report

Variant	rs9342795
Chromosome Location	chr6:71417986-71417987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71409135..71411065-chr6:71416905..71419669,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2273566	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes]
rs4613778	0.86[YRI][hapmap]
rs4706460	1.00[ASW][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs4707842	0.81[AFR][1000 genomes]
rs4707844	0.85[JPT][hapmap];0.92[LWK][hapmap];0.89[AFR][1000 genomes]
rs59058072	0.93[EUR][1000 genomes]
rs6902786	0.90[AFR][1000 genomes]
rs6919104	0.80[AFR][1000 genomes]
rs7747310	0.84[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7748778	0.93[YRI][hapmap]
rs7754217	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764445	0.90[AFR][1000 genomes]
rs781969	0.86[YRI][hapmap]
rs9342796	0.83[ASW][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap]
rs9351793	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9354937	0.94[AFR][1000 genomes]
rs9354938	0.92[AFR][1000 genomes]
rs9360426	0.86[JPT][hapmap];0.93[YRI][hapmap]
rs9364102	0.90[AFR][1000 genomes]
rs9364103	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364106	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71407400-71419200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:71407400-71419400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:71407800-71419000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:71407800-71419600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:71408200-71420200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:71408400-71418000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:71409600-71419400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:71409800-71421600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:71409800-71422600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:71411200-71421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:71411400-71419000	Weak transcription	Esophagus	oesophagus
12	chr6:71411400-71419000	Weak transcription	Gastric	stomach
13	chr6:71411400-71423200	Weak transcription	Psoas Muscle	Psoas
14	chr6:71414800-71419200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:71414800-71419600	Weak transcription	NHDF-Ad	bronchial
16	chr6:71415400-71418200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:71416000-71418400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:71416200-71419600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:71417400-71418000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:71417400-71418400	Enhancers	GM12878-XiMat	blood
21	chr6:71417400-71418400	Enhancers	HUVEC	blood vessel
22	chr6:71417400-71420000	Enhancers	Small Intestine	intestine
23	chr6:71417600-71418000	Enhancers	Primary T cells from cord blood	blood
24	chr6:71417600-71418200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:71417600-71418200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:71417600-71418200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:71417600-71418200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr6:71417600-71418400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:71417600-71418400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:71417600-71418400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:71417600-71418400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr6:71417600-71418800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:71417600-71419000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:71417600-71419400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:71417600-71419800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:71417600-71420200	Enhancers	Stomach Mucosa	stomach
37	chr6:71417800-71418000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:71417800-71418000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:71417800-71418000	Enhancers	Duodenum Mucosa	Duodenum
40	chr6:71417800-71418200	Enhancers	Brain Substantia Nigra	brain

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