Variant report

Variant	rs7747310
Chromosome Location	chr6:71398441-71398442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12215915	0.86[YRI][hapmap]
rs2273566	1.00[YRI][hapmap]
rs2274972	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734369	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs4282370	0.83[YRI][hapmap]
rs4706460	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706462	0.85[YRI][hapmap]
rs4707842	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61001507	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902786	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919104	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6940971	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941789	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7748778	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs7754217	0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7764445	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9342795	0.84[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9342796	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9346403	0.90[EUR][1000 genomes]
rs9351793	0.89[AFR][1000 genomes]
rs9354937	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9354938	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9360426	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364102	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364103	0.89[AFR][1000 genomes]
rs9364106	0.92[YRI][hapmap]
rs9364109	0.90[EUR][1000 genomes]
rs9364111	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71383000-71410400	Weak transcription	Gastric	stomach
2	chr6:71384600-71408800	Weak transcription	Pancreas	Pancrea
3	chr6:71390400-71410000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:71395200-71403200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:71395800-71398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:71395800-71417400	Weak transcription	Small Intestine	intestine
7	chr6:71396200-71400400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:71396200-71409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:71396400-71408800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:71396400-71410600	Weak transcription	Fetal Heart	heart
11	chr6:71396600-71403400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:71396800-71403200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:71396800-71403200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:71396800-71403200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:71396800-71403200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:71396800-71410400	Weak transcription	Liver	Liver
17	chr6:71396800-71411000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:71397400-71403200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:71398400-71398600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:71398400-71414400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links