Variant report
| Variant | rs9364109 |
|---|---|
| Chromosome Location | chr6:71578976-71578977 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:71578713..71580960-chr6:71581384..71584217,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs2274972 | 0.92[EUR][1000 genomes] |
| rs3734369 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4706460 | 0.92[EUR][1000 genomes] |
| rs4707842 | 0.92[EUR][1000 genomes] |
| rs4707844 | 0.92[EUR][1000 genomes] |
| rs61001507 | 0.92[EUR][1000 genomes] |
| rs6902786 | 0.92[EUR][1000 genomes] |
| rs6919104 | 0.88[EUR][1000 genomes] |
| rs6940971 | 0.92[EUR][1000 genomes] |
| rs6941789 | 0.92[EUR][1000 genomes] |
| rs7747310 | 0.90[EUR][1000 genomes] |
| rs7748778 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7764445 | 0.92[EUR][1000 genomes] |
| rs9342796 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9346403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9354937 | 0.92[EUR][1000 genomes] |
| rs9354938 | 0.92[EUR][1000 genomes] |
| rs9360426 | 0.90[EUR][1000 genomes] |
| rs9364102 | 0.88[EUR][1000 genomes] |
| rs9364111 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932111 | chr6:70736835-71633094 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv917312 | chr6:70961903-71601688 | Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71571600-71584000 | Weak transcription | Pancreas | Pancrea |
