Variant report

Variant	rs6941789
Chromosome Location	chr6:71466372-71466373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2274972	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3734369	0.97[EUR][1000 genomes]
rs4706460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4707842	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707844	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61001507	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902786	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6919104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6940971	1.00[EUR][1000 genomes]
rs7747310	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7748778	0.97[EUR][1000 genomes]
rs7754217	0.87[AFR][1000 genomes]
rs7764445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9342796	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9346403	0.92[EUR][1000 genomes]
rs9351793	0.83[AFR][1000 genomes]
rs9354937	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9354938	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9360426	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364102	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9364103	0.83[AFR][1000 genomes]
rs9364106	0.82[AFR][1000 genomes]
rs9364109	0.92[EUR][1000 genomes]
rs9364111	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71428200-71476400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:71435800-71477600	Weak transcription	HSMM	muscle
3	chr6:71436200-71470200	Weak transcription	NHDF-Ad	bronchial
4	chr6:71438400-71468000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:71438400-71474000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:71439600-71474800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:71440400-71488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:71441800-71474200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:71443200-71488800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:71444800-71523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:71445200-71482200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:71445600-71474000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:71447800-71500600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:71451400-71483200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:71451600-71467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:71451800-71467800	Weak transcription	Brain Angular Gyrus	brain
17	chr6:71451800-71473600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:71451800-71474800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:71451800-71480200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:71451800-71481000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:71451800-71488200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:71451800-71488400	Weak transcription	Pancreas	Pancrea
23	chr6:71452000-71473600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:71452600-71473400	Weak transcription	Primary T cells from cord blood	blood
25	chr6:71453000-71489800	Weak transcription	Psoas Muscle	Psoas
26	chr6:71460200-71480200	Weak transcription	Fetal Intestine Large	intestine
27	chr6:71461400-71481000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:71462200-71468600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:71462400-71474000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:71462600-71468400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:71463000-71468400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:71463200-71492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:71463400-71468400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:71463400-71488200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:71464200-71466400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:71464200-71466400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:71464200-71466600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:71464400-71473600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:71464600-71466400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:71464800-71466400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:71464800-71466400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:71464800-71466400	Strong transcription	Primary B cells from cord blood	blood
43	chr6:71464800-71466400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:71464800-71466400	Strong transcription	Adipose Nuclei	Adipose
45	chr6:71464800-71466400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:71464800-71466600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:71464800-71466600	Strong transcription	Liver	Liver
48	chr6:71464800-71474600	Weak transcription	Fetal Thymus	thymus
49	chr6:71465000-71466400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:71465000-71466400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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