Variant report

Variant	rs9342796
Chromosome Location	chr6:71519504-71519505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71518186..71520877-chr6:71521602..71524728,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12215915	0.85[YRI][hapmap]
rs2273566	0.88[ASW][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2274972	1.00[EUR][1000 genomes]
rs3734369	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4282370	0.81[YRI][hapmap]
rs4706460	0.83[ASW][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4706462	0.85[YRI][hapmap]
rs4707842	1.00[EUR][1000 genomes]
rs4707844	0.81[CHD][hapmap];0.95[LWK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59058072	0.84[AFR][1000 genomes]
rs61001507	1.00[EUR][1000 genomes]
rs6902786	1.00[EUR][1000 genomes]
rs6919104	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6940971	1.00[EUR][1000 genomes]
rs6941789	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7747310	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7748778	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754217	0.83[ASW][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs7764445	1.00[EUR][1000 genomes]
rs9342795	0.83[ASW][hapmap];0.88[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap]
rs9346403	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9354937	1.00[EUR][1000 genomes]
rs9354938	1.00[EUR][1000 genomes]
rs9360426	0.81[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9364102	0.95[EUR][1000 genomes]
rs9364106	0.83[ASW][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap]
rs9364109	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9364111	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71444800-71523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:71468800-71532200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:71473800-71520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:71474600-71568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:71489000-71521800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:71491800-71526200	Weak transcription	HSMM	muscle
7	chr6:71492000-71522200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:71492400-71563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:71493000-71526000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:71501800-71520000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:71503600-71522800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:71505600-71534400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:71506800-71570600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:71507800-71523400	Weak transcription	GM12878-XiMat	blood
15	chr6:71508200-71523200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:71508200-71531400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:71508400-71543800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:71509800-71520000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:71511600-71554600	Weak transcription	Dnd41	blood
20	chr6:71512200-71523800	Weak transcription	HSMMtube	muscle
21	chr6:71512600-71523800	Weak transcription	Right Ventricle	heart
22	chr6:71514400-71523800	Weak transcription	Psoas Muscle	Psoas
23	chr6:71514800-71535200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:71514800-71548400	Weak transcription	Ovary	ovary
25	chr6:71516000-71523800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:71516000-71528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:71516200-71520200	Weak transcription	Lung	lung
28	chr6:71516200-71521000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:71516200-71522000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:71516200-71524200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:71516200-71534600	Weak transcription	Aorta	Aorta
32	chr6:71516200-71534600	Weak transcription	Left Ventricle	heart
33	chr6:71516200-71535000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:71516200-71538400	Weak transcription	Esophagus	oesophagus
35	chr6:71516200-71538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:71516200-71546200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:71516400-71519800	Weak transcription	Fetal Intestine Small	intestine
38	chr6:71516400-71523800	Weak transcription	Gastric	stomach
39	chr6:71516400-71524400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:71516400-71525200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:71516400-71532200	Weak transcription	Primary T cells from cord blood	blood
42	chr6:71516400-71535600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:71516400-71562200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:71516400-71567600	Weak transcription	Pancreas	Pancrea
45	chr6:71516600-71520000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:71516600-71522400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:71516600-71522600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:71516600-71523200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:71516600-71530600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:71516600-71543400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links