Variant report

Variant	rs9344821
Chromosome Location	chr6:64881004-64881005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11753432	0.85[EUR][1000 genomes]
rs11756096	0.82[ASN][1000 genomes]
rs13190948	0.81[ASN][1000 genomes]
rs13205132	0.88[EUR][1000 genomes]
rs13219120	0.87[EUR][1000 genomes]
rs3003676	0.88[EUR][1000 genomes]
rs3013161	0.89[EUR][1000 genomes]
rs3013162	0.88[EUR][1000 genomes]
rs3013164	0.88[EUR][1000 genomes]
rs3013165	0.88[EUR][1000 genomes]
rs35202570	0.83[EUR][1000 genomes]
rs4235967	0.95[EUR][1000 genomes]
rs4326220	0.85[EUR][1000 genomes]
rs5002649	0.92[EUR][1000 genomes]
rs6903570	0.81[ASN][1000 genomes]
rs6916780	0.84[EUR][1000 genomes]
rs9344824	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9344825	0.87[EUR][1000 genomes]
rs9344836	0.86[EUR][1000 genomes]
rs9344916	0.82[EUR][1000 genomes]
rs9344919	0.83[EUR][1000 genomes]
rs9353659	0.82[EUR][1000 genomes]
rs9362520	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9362521	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9362607	0.83[EUR][1000 genomes]
rs9451209	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1033519	chr6:64843989-65017528	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018676	chr6:64867241-64904764	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538273	chr6:64870667-64900058	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1024558	chr6:64876263-65000031	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3328884	chr6:64880989-64881269	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links