Variant report

Variant	rs9362520
Chromosome Location	chr6:64881187-64881188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10806408	0.80[EUR][1000 genomes]
rs11753432	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12175973	0.80[EUR][1000 genomes]
rs13205132	0.89[EUR][1000 genomes]
rs13219120	0.89[EUR][1000 genomes]
rs1474830	0.80[EUR][1000 genomes]
rs1474831	0.80[EUR][1000 genomes]
rs1474832	0.80[EUR][1000 genomes]
rs1474833	0.80[EUR][1000 genomes]
rs1543405	0.80[EUR][1000 genomes]
rs1555223	0.80[EUR][1000 genomes]
rs1555224	0.80[EUR][1000 genomes]
rs1555226	0.80[EUR][1000 genomes]
rs1884177	0.80[EUR][1000 genomes]
rs1922961	0.80[EUR][1000 genomes]
rs1922963	0.80[EUR][1000 genomes]
rs1922964	0.80[EUR][1000 genomes]
rs1922980	0.80[EUR][1000 genomes]
rs1922981	0.80[EUR][1000 genomes]
rs2057160	0.80[EUR][1000 genomes]
rs2057161	0.80[EUR][1000 genomes]
rs2057162	0.80[EUR][1000 genomes]
rs3003676	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3013161	0.90[EUR][1000 genomes]
rs3013162	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3013164	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3013165	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35202570	0.86[EUR][1000 genomes]
rs3915899	0.80[EUR][1000 genomes]
rs3930877	0.80[EUR][1000 genomes]
rs4235967	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4235968	0.82[EUR][1000 genomes]
rs4235969	0.82[EUR][1000 genomes]
rs4326220	0.87[EUR][1000 genomes]
rs4351236	0.81[EUR][1000 genomes]
rs4365910	0.80[EUR][1000 genomes]
rs4435927	0.82[EUR][1000 genomes]
rs4472328	0.81[EUR][1000 genomes]
rs4482959	0.81[EUR][1000 genomes]
rs4504461	0.81[EUR][1000 genomes]
rs4710473	0.81[EUR][1000 genomes]
rs4710474	0.81[EUR][1000 genomes]
rs4710475	0.81[EUR][1000 genomes]
rs5002649	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs662644	0.80[EUR][1000 genomes]
rs6915412	0.80[EUR][1000 genomes]
rs6916780	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6925966	0.80[EUR][1000 genomes]
rs6926103	0.80[EUR][1000 genomes]
rs6930252	0.80[EUR][1000 genomes]
rs7451037	0.80[EUR][1000 genomes]
rs9342186	0.81[EUR][1000 genomes]
rs9342187	0.81[EUR][1000 genomes]
rs9342191	0.80[EUR][1000 genomes]
rs9342192	0.80[EUR][1000 genomes]
rs9344821	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9344824	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9344825	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9344836	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9344916	0.86[EUR][1000 genomes]
rs9344919	0.86[EUR][1000 genomes]
rs9344931	0.80[EUR][1000 genomes]
rs9344936	0.80[EUR][1000 genomes]
rs9351194	0.82[EUR][1000 genomes]
rs9351198	0.82[EUR][1000 genomes]
rs9351199	0.82[EUR][1000 genomes]
rs9351200	0.82[EUR][1000 genomes]
rs9353659	0.86[EUR][1000 genomes]
rs9353665	0.80[EUR][1000 genomes]
rs9359831	0.82[EUR][1000 genomes]
rs9359839	0.81[EUR][1000 genomes]
rs9362521	0.89[EUR][1000 genomes]
rs9362607	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9362608	0.80[EUR][1000 genomes]
rs9362635	0.80[EUR][1000 genomes]
rs9362637	0.80[EUR][1000 genomes]
rs9362642	0.80[EUR][1000 genomes]
rs9362645	0.80[EUR][1000 genomes]
rs9362646	0.80[EUR][1000 genomes]
rs9362651	0.80[EUR][1000 genomes]
rs9451209	0.86[EUR][1000 genomes]
rs9451281	0.80[EUR][1000 genomes]
rs987039	0.80[EUR][1000 genomes]
rs987040	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1033519	chr6:64843989-65017528	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018676	chr6:64867241-64904764	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538273	chr6:64870667-64900058	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1024558	chr6:64876263-65000031	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3328884	chr6:64880989-64881269	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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