Variant report

Variant	rs9348999
Chromosome Location	chr6:11875875-11875876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10947625	0.92[ASN][1000 genomes]
rs10947626	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16872016	0.95[ASN][1000 genomes]
rs28872799	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7341230	0.92[ASN][1000 genomes]
rs7341232	0.92[ASN][1000 genomes]
rs9348998	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349012	1.00[EUR][1000 genomes]
rs9368949	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368951	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368952	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368954	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368956	0.92[ASN][1000 genomes]
rs9368962	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368968	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380581	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380600	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380623	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394369	0.95[ASN][1000 genomes]
rs9394370	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394383	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470330	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:11871200-11876200	Weak transcription	Fetal Stomach	stomach
3	chr6:11871200-11877400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:11874200-11876400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr6:11874800-11876200	Enhancers	Ovary	ovary
6	chr6:11875400-11876000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:11875400-11876000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:11875800-11876000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:11875800-11876000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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