Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:11864395..11867152-chr6:11883777..11885671,2	K562	blood:
2	chr6:11885231..11889211-chr6:11890094..11893218,4	K562	blood:
3	chr6:11884524..11887036-chr6:12011232..12013944,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10947625	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947626	0.97[ASN][1000 genomes]
rs16872016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235404	1.00[CEU][hapmap]
rs28872799	1.00[ASN][1000 genomes]
rs7341230	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341232	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348998	0.92[ASN][1000 genomes]
rs9348999	0.95[ASN][1000 genomes]
rs9349012	0.83[ASN][1000 genomes]
rs9368949	1.00[ASN][1000 genomes]
rs9368951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9368952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9368954	0.95[ASN][1000 genomes]
rs9368956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368962	0.97[ASN][1000 genomes]
rs9368968	0.94[ASN][1000 genomes]
rs9380581	0.97[ASN][1000 genomes]
rs9380600	0.97[ASN][1000 genomes]
rs9380623	0.94[ASN][1000 genomes]
rs9394370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[ASN][1000 genomes]
rs9394383	0.97[ASN][1000 genomes]
rs9470330	0.97[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11884800-11887800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11885400-11885600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:11885400-11887000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search: