Variant report

Variant	rs9354505
Chromosome Location	chr6:67634498-67634499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12203791	1.00[AFR][1000 genomes]
rs1453899	1.00[AFR][1000 genomes]
rs2444655	1.00[AFR][1000 genomes]
rs2444671	1.00[AFR][1000 genomes]
rs2444672	1.00[AFR][1000 genomes]
rs2444673	1.00[AFR][1000 genomes]
rs2444677	1.00[AFR][1000 genomes]
rs2502253	1.00[AFR][1000 genomes]
rs2502290	1.00[AFR][1000 genomes]
rs2503896	1.00[AFR][1000 genomes]
rs2503932	1.00[AFR][1000 genomes]
rs2503935	1.00[AFR][1000 genomes]
rs2503936	1.00[AFR][1000 genomes]
rs2503937	1.00[AFR][1000 genomes]
rs2503938	1.00[AFR][1000 genomes]
rs2503949	1.00[AFR][1000 genomes]
rs34646421	1.00[AFR][1000 genomes]
rs4573065	0.83[EUR][1000 genomes]
rs4710641	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6455204	1.00[AFR][1000 genomes]
rs6455209	1.00[AFR][1000 genomes]
rs6912709	0.81[ASN][1000 genomes]
rs6933579	1.00[AFR][1000 genomes]
rs9345932	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9345938	1.00[AFR][1000 genomes]
rs9345939	1.00[AFR][1000 genomes]
rs9345946	1.00[AFR][1000 genomes]
rs9354503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354518	1.00[AFR][1000 genomes]
rs9360251	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886061	chr6:67048298-67902610	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948808	chr6:67154418-67790773	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948518	chr6:67184276-67907571	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031632	chr6:67196653-67833819	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538290	chr6:67196653-67833819	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886070	chr6:67488983-68094791	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv603584	chr6:67578852-67642950	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886071	chr6:67582625-67651030	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886072	chr6:67589752-67655625	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv886073	chr6:67589752-67737802	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67632200-67635800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:67633000-67646600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:67634200-67635800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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