Variant report

Variant	rs9345946
Chromosome Location	chr6:67687752-67687753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:67680520..67684153-chr6:67686504..67689501,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12193398	0.89[ASN][1000 genomes]
rs12203791	1.00[AFR][1000 genomes]
rs1453899	1.00[AFR][1000 genomes]
rs2444655	1.00[AFR][1000 genomes]
rs2444671	1.00[AFR][1000 genomes]
rs2444672	1.00[AFR][1000 genomes]
rs2444673	1.00[AFR][1000 genomes]
rs2444677	1.00[AFR][1000 genomes]
rs2444718	1.00[AFR][1000 genomes]
rs2502253	1.00[AFR][1000 genomes]
rs2502290	1.00[AFR][1000 genomes]
rs2503896	1.00[AFR][1000 genomes]
rs2503932	1.00[AFR][1000 genomes]
rs2503935	1.00[AFR][1000 genomes]
rs2503936	1.00[AFR][1000 genomes]
rs2503937	1.00[AFR][1000 genomes]
rs2503938	1.00[AFR][1000 genomes]
rs2503949	1.00[AFR][1000 genomes]
rs34646421	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6455204	1.00[AFR][1000 genomes]
rs6455209	1.00[AFR][1000 genomes]
rs6933579	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9345932	1.00[AFR][1000 genomes]
rs9345938	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9345939	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9345941	0.89[ASN][1000 genomes]
rs9354503	1.00[AFR][1000 genomes]
rs9354505	1.00[AFR][1000 genomes]
rs9354518	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360251	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886061	chr6:67048298-67902610	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948808	chr6:67154418-67790773	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948518	chr6:67184276-67907571	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031632	chr6:67196653-67833819	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538290	chr6:67196653-67833819	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886070	chr6:67488983-68094791	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv886073	chr6:67589752-67737802	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2757174	chr6:67664566-67688283	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv2759437	chr6:67664566-67688283	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv1027956	chr6:67675088-67688737	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv1023715	chr6:67676402-67688737	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67687600-67688200	Enhancers	Fetal Lung	lung

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