Variant report

Variant	rs9357097
Chromosome Location	chr6:30285121-30285122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30131198..30134190-chr6:30284025..30286147,2	K562	blood:
2	chr6:30274918..30276701-chr6:30282501..30285291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204610	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1075105	0.91[EUR][1000 genomes]
rs12055553	0.93[EUR][1000 genomes]
rs12192505	0.89[EUR][1000 genomes]
rs1264617	0.92[EUR][1000 genomes]
rs1264618	0.92[EUR][1000 genomes]
rs1264619	0.90[EUR][1000 genomes]
rs261947	0.93[EUR][1000 genomes]
rs2844759	0.90[EUR][1000 genomes]
rs2844760	0.91[EUR][1000 genomes]
rs4711213	0.92[EUR][1000 genomes]
rs6900042	0.93[EUR][1000 genomes]
rs6906180	0.92[EUR][1000 genomes]
rs6912771	0.93[EUR][1000 genomes]
rs6913293	0.93[EUR][1000 genomes]
rs6924282	0.92[EUR][1000 genomes]
rs6924453	0.93[EUR][1000 genomes]
rs6931387	0.93[EUR][1000 genomes]
rs9295842	0.93[EUR][1000 genomes]
rs9357098	0.92[EUR][1000 genomes]
rs9368635	0.93[EUR][1000 genomes]
rs9380167	0.93[EUR][1000 genomes]
rs9380172	0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9357097	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs9357097	HCG18	cis	multi-tissue	Pritchard
rs9357097	HCG18	cis	normal skin	skin_eQTL
rs9357097	FLJ45422	cis	multi-tissue	Pritchard
rs9357097	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
2	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
3	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
5	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
6	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:30264200-30286600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:30264200-30289800	Weak transcription	Gastric	stomach
9	chr6:30264400-30285200	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:30269200-30285800	Strong transcription	Dnd41	blood
11	chr6:30270600-30292600	Weak transcription	Esophagus	oesophagus
12	chr6:30270800-30292200	Weak transcription	NHDF-Ad	bronchial
13	chr6:30271000-30292400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:30271000-30292800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:30271400-30291400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:30272200-30292200	Weak transcription	Fetal Brain Male	brain
17	chr6:30272400-30289600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:30274400-30285400	Strong transcription	Primary B cells from cord blood	blood
19	chr6:30274600-30292200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:30274600-30292600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:30275200-30286400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:30275400-30286800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:30275400-30293400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:30276600-30285200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:30278200-30292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:30279400-30287200	Strong transcription	GM12878-XiMat	blood
27	chr6:30279600-30285400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:30279600-30288400	Strong transcription	Fetal Stomach	stomach
29	chr6:30279800-30287000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:30279800-30287600	Strong transcription	NHEK	skin
31	chr6:30280000-30288000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:30280000-30289400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:30280000-30290400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:30280200-30286800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:30280400-30285400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:30280400-30292800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:30280600-30287400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:30280800-30292000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr6:30281000-30286800	Strong transcription	HepG2	liver
40	chr6:30281200-30292200	Weak transcription	Fetal Brain Female	brain
41	chr6:30281400-30285400	Strong transcription	Hela-S3	cervix
42	chr6:30281800-30285400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:30281800-30286200	Weak transcription	Small Intestine	intestine
44	chr6:30281800-30286400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:30281800-30292000	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:30281800-30292600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:30282000-30288400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:30282000-30289000	Weak transcription	HUVEC	blood vessel
49	chr6:30282000-30292000	Weak transcription	Fetal Lung	lung
50	chr6:30282000-30292400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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