Variant report

Variant	rs1264618
Chromosome Location	chr6:30263069-30263070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30261501..30265546-chr6:30310228..30314438,4	K562	blood:
2	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1075105	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055553	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192505	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1264617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1264619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187979	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2428506	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2428507	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2516696	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2516708	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2516715	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2523740	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs261947	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2844759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844760	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844762	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2844764	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2844766	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4711213	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6900042	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906180	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6912771	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913293	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924282	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924453	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6931387	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295842	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357097	0.92[EUR][1000 genomes]
rs9357098	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368635	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380167	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380172	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1264618	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs1264618	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30255600-30264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:30255800-30264400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:30256000-30263200	Strong transcription	HSMMtube	muscle
4	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:30256200-30263800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:30256200-30264000	Strong transcription	Brain Anterior Caudate	brain
7	chr6:30256200-30264800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
9	chr6:30256400-30263200	Strong transcription	Brain Inferior Temporal Lobe	brain
10	chr6:30256400-30263200	Strong transcription	Thymus	Thymus
11	chr6:30256400-30263400	Strong transcription	Left Ventricle	heart
12	chr6:30256400-30263800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:30256400-30263800	Strong transcription	Fetal Intestine Large	intestine
14	chr6:30256400-30264000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr6:30256400-30264200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:30256400-30264200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr6:30256400-30264400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:30256600-30263600	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr6:30256600-30263800	Strong transcription	A549	lung
20	chr6:30256600-30264200	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr6:30256800-30263200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:30256800-30263800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:30256800-30264400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:30257000-30263800	Strong transcription	Primary B cells from cord blood	blood
25	chr6:30257000-30264000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:30257000-30264000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:30257000-30264000	Strong transcription	Placenta	Placenta
28	chr6:30257000-30264200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:30257000-30264200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:30257000-30264200	Strong transcription	Fetal Stomach	stomach
31	chr6:30257000-30264200	Strong transcription	NH-A	brain
32	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:30257000-30264400	Strong transcription	Fetal Thymus	thymus
35	chr6:30257200-30263200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:30257200-30263400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:30257200-30264200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:30257200-30264400	Strong transcription	Primary T cells from cord blood	blood
39	chr6:30257200-30264600	Strong transcription	Fetal Muscle Leg	muscle
40	chr6:30257400-30264400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:30257600-30264000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
43	chr6:30257800-30264000	Strong transcription	Liver	Liver
44	chr6:30258000-30264000	Strong transcription	HepG2	liver
45	chr6:30258000-30264200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:30258200-30264200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr6:30258400-30264000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr6:30258400-30264000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:30258400-30264200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:30258400-30264200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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