The 2.0 version of rSNPBase

Variant report

Variant rs2428506
Chromosome Location chr6:30229768-30229769
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30228000-30229800 Weak transcription Placenta Amnion Placenta Amnion
2 chr6:30228200-30231200 Weak transcription Ovary ovary
3 chr6:30228200-30232000 Weak transcription HSMMtube muscle
4 chr6:30228200-30234200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr6:30228200-30237400 Weak transcription Aorta Aorta
6 chr6:30228400-30230000 Genic enhancers Primary B cells from peripheral blood blood
7 chr6:30228400-30230000 Weak transcription Colonic Mucosa Colon
8 chr6:30228400-30230400 Weak transcription Small Intestine intestine
9 chr6:30228400-30230800 Weak transcription NH-A brain
10 chr6:30228400-30231400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr6:30228400-30231400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr6:30228400-30231400 Weak transcription Muscle Satellite Cultured Cells --
13 chr6:30228400-30231400 Weak transcription HMEC breast
14 chr6:30228400-30231400 Weak transcription NHDF-Ad bronchial
15 chr6:30228400-30231600 Weak transcription HSMM muscle
16 chr6:30228400-30231800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr6:30228400-30232400 Weak transcription Brain Germinal Matrix brain
18 chr6:30228400-30232400 Weak transcription Gastric stomach
19 chr6:30228400-30232800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr6:30228400-30236800 Weak transcription Brain Hippocampus Middle brain
21 chr6:30228400-30238000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr6:30228400-30238200 Weak transcription Left Ventricle heart
23 chr6:30228400-30239600 Weak transcription HepG2 liver
24 chr6:30228400-30239800 Weak transcription Colon Smooth Muscle Colon
25 chr6:30228600-30230800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr6:30228600-30230800 Weak transcription Brain Anterior Caudate brain
27 chr6:30228600-30230800 Weak transcription Pancreas Pancrea
28 chr6:30228600-30232200 Weak transcription Fetal Brain Male brain
29 chr6:30228600-30233000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr6:30228600-30233200 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr6:30228600-30233200 Weak transcription Thymus Thymus
32 chr6:30228600-30233800 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr6:30228600-30234400 Weak transcription Fetal Brain Female brain
34 chr6:30228600-30236600 Weak transcription Brain Substantia Nigra brain
35 chr6:30228800-30229800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr6:30228800-30230000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr6:30228800-30230000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr6:30228800-30230400 Strong transcription Fetal Stomach stomach
39 chr6:30228800-30230600 Weak transcription Lung lung
40 chr6:30228800-30230600 Weak transcription Right Ventricle heart
41 chr6:30228800-30231000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr6:30228800-30231200 Weak transcription Hela-S3 cervix
43 chr6:30228800-30231400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr6:30228800-30231600 Weak transcription Osteobl bone
45 chr6:30228800-30234200 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr6:30228800-30234600 Weak transcription H9 Cell Line embryonic stem cell
47 chr6:30228800-30234600 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr6:30229000-30229800 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr6:30229000-30229800 Strong transcription NHLF lung
50 chr6:30229000-30231000 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015