Variant report

Variant	rs2844762
Chromosome Location	chr6:30236754-30236755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30235309..30237040-chr6:30295546..30298007,2	K562	blood:

Variant related genes	Relation type
ENSG00000204599	Chromatin interaction
ENSG00000248167	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1075105	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055553	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12192505	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1264617	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1264618	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1264619	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2187979	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2428506	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428507	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2516696	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516708	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516715	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523740	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs261947	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2844759	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2844760	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2844764	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844766	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711213	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6900042	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6906180	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6912771	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6913293	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6924282	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6924453	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6931387	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9295842	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9357098	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9368635	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9380167	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9380172	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2844762	HLA-A	cis	lymphoblastoid	GTEx
rs2844762	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30228200-30237400	Weak transcription	Aorta	Aorta
2	chr6:30228400-30236800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:30228400-30238000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:30228400-30238200	Weak transcription	Left Ventricle	heart
5	chr6:30228400-30239600	Weak transcription	HepG2	liver
6	chr6:30228400-30239800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:30231600-30239600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:30233200-30243600	Weak transcription	HSMMtube	muscle
9	chr6:30233800-30241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:30235000-30237400	Weak transcription	Primary B cells from cord blood	blood

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