Variant report

Variant	rs9357229
Chromosome Location	chr6:36854693-36854694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36841771..36843991-chr6:36852556..36855136,3	MCF-7	breast:
2	chr6:36563465..36565521-chr6:36853930..36855526,2	K562	blood:
3	chr6:36853681..36855481-chr6:36934818..36937310,2	K562	blood:
4	chr6:36852278..36855515-chr6:36952430..36957026,4	MCF-7	breast:
5	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
6	chr6:36852138..36856054-chr6:36953606..36956862,5	K562	blood:
7	chr6:36853647..36856578-chr6:36948651..36952350,3	K562	blood:
8	chr6:36841338..36845965-chr6:36851992..36855231,4	MCF-7	breast:
9	chr6:36853734..36855339-chr6:37016724..37019565,3	K562	blood:
10	chr6:36560243..36562699-chr6:36853442..36856379,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000137168	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11751790	0.85[ASN][1000 genomes]
rs11754437	0.92[ASN][1000 genomes]
rs11756425	0.93[ASN][1000 genomes]
rs11758600	0.93[ASN][1000 genomes]
rs12111266	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs12529769	0.81[AFR][1000 genomes]
rs12661551	0.85[ASN][1000 genomes]
rs12664239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071822	0.83[ASN][1000 genomes]
rs2071823	0.92[ASN][1000 genomes]
rs4711471	0.85[ASN][1000 genomes]
rs4711472	0.93[ASN][1000 genomes]
rs4714019	0.91[ASN][1000 genomes]
rs4714020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56302344	0.81[AFR][1000 genomes]
rs62406642	0.80[ASN][1000 genomes]
rs62406644	0.84[ASN][1000 genomes]
rs6910582	0.93[ASN][1000 genomes]
rs6912602	0.82[ASN][1000 genomes]
rs6912891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913047	0.92[ASN][1000 genomes]
rs72846083	0.93[ASN][1000 genomes]
rs7745555	0.81[AFR][1000 genomes]
rs9349015	0.84[ASN][1000 genomes]
rs9349017	0.87[ASN][1000 genomes]
rs9357230	1.00[YRI][hapmap]
rs9368965	0.89[ASN][1000 genomes]
rs9380614	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36853000-36855000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:36853200-36854800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:36853200-36854800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:36853200-36854800	Active TSS	Fetal Muscle Trunk	muscle
5	chr6:36853200-36854800	Active TSS	Psoas Muscle	Psoas
6	chr6:36853200-36855000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:36853400-36854800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:36853400-36854800	Active TSS	Esophagus	oesophagus
9	chr6:36853400-36855000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:36853400-36855000	Active TSS	Fetal Lung	lung
11	chr6:36853400-36855200	Active TSS	GM12878-XiMat	blood
12	chr6:36853600-36854800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:36853600-36854800	Active TSS	Brain Angular Gyrus	brain
14	chr6:36853600-36854800	Active TSS	Thymus	Thymus
15	chr6:36853600-36854800	Active TSS	Dnd41	blood
16	chr6:36853600-36855000	Active TSS	HSMM	muscle
17	chr6:36853600-36855200	Active TSS	K562	blood
18	chr6:36854000-36854800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr6:36854000-36854800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr6:36854000-36854800	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr6:36854000-36854800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:36854000-36854800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:36854000-36854800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:36854000-36854800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr6:36854200-36854800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr6:36854200-36854800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:36854200-36854800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr6:36854200-36854800	Flanking Active TSS	Liver	Liver
29	chr6:36854200-36854800	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr6:36854200-36854800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:36854200-36854800	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr6:36854200-36854800	Flanking Active TSS	NHEK	skin
33	chr6:36854200-36854800	Flanking Active TSS	Osteobl	bone
34	chr6:36854200-36855000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:36854200-36855000	Flanking Active TSS	Hela-S3	cervix
36	chr6:36854200-36855400	Weak transcription	Left Ventricle	heart
37	chr6:36854200-36856200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:36854200-36856600	Weak transcription	Pancreas	Pancrea
39	chr6:36854200-36860200	Weak transcription	Spleen	Spleen
40	chr6:36854200-36862200	Weak transcription	Lung	lung
41	chr6:36854200-36868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:36854200-36873600	Weak transcription	Aorta	Aorta
43	chr6:36854200-36881000	Weak transcription	Gastric	stomach
44	chr6:36854200-36887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:36854400-36854800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:36854400-36854800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:36854400-36854800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:36854400-36854800	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr6:36854400-36854800	Flanking Active TSS	Fetal Brain Female	brain
50	chr6:36854400-36854800	Flanking Active TSS	Fetal Heart	heart

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