Variant report

Variant	rs9357230
Chromosome Location	chr6:36855382-36855383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11751790	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs11754437	0.92[ASN][1000 genomes]
rs11756425	1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs11758600	0.93[ASN][1000 genomes]
rs12111266	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs12529769	0.81[AFR][1000 genomes]
rs12661551	0.85[ASN][1000 genomes]
rs12664239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071822	0.84[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs2071823	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs4711471	0.85[ASN][1000 genomes]
rs4711472	0.93[ASN][1000 genomes]
rs4714019	0.91[ASN][1000 genomes]
rs4714020	0.82[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56302344	0.81[AFR][1000 genomes]
rs62406642	0.80[ASN][1000 genomes]
rs62406644	0.84[ASN][1000 genomes]
rs6900068	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6910582	0.93[ASN][1000 genomes]
rs6912602	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs6912891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913047	0.92[ASN][1000 genomes]
rs72846083	0.93[ASN][1000 genomes]
rs7745555	0.81[AFR][1000 genomes]
rs9349015	0.84[ASN][1000 genomes]
rs9349017	0.88[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9357229	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368965	0.89[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs9380614	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36854200-36855400	Weak transcription	Left Ventricle	heart
2	chr6:36854200-36856200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:36854200-36856600	Weak transcription	Pancreas	Pancrea
4	chr6:36854200-36860200	Weak transcription	Spleen	Spleen
5	chr6:36854200-36862200	Weak transcription	Lung	lung
6	chr6:36854200-36868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:36854200-36873600	Weak transcription	Aorta	Aorta
8	chr6:36854200-36881000	Weak transcription	Gastric	stomach
9	chr6:36854200-36887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:36854400-36855400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:36854400-36855600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:36854400-36855600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:36854400-36855800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:36854400-36856200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:36854400-36858000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:36854400-36860200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:36854400-36868400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:36854400-36893000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:36854600-36855400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:36854600-36855400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:36854600-36855400	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:36854600-36855400	Enhancers	Brain Substantia Nigra	brain
23	chr6:36854600-36855400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:36854600-36855400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:36854600-36855400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:36854600-36855400	Enhancers	Right Ventricle	heart
27	chr6:36854600-36855400	Enhancers	Small Intestine	intestine
28	chr6:36854600-36855400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:36854600-36855600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:36854600-36856400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:36854600-36857400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr6:36854600-36859800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:36854600-36869600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36854600-36870000	Weak transcription	Stomach Mucosa	stomach
35	chr6:36854800-36855400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:36854800-36855400	Enhancers	Primary B cells from cord blood	blood
37	chr6:36854800-36855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:36854800-36855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:36854800-36855400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:36854800-36855400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:36854800-36855400	Enhancers	Adipose Nuclei	Adipose
42	chr6:36854800-36855400	Enhancers	Brain Anterior Caudate	brain
43	chr6:36854800-36855400	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:36854800-36855400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:36854800-36855400	Enhancers	Thymus	Thymus
46	chr6:36854800-36855400	Flanking Active TSS	Dnd41	blood
47	chr6:36854800-36855600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr6:36854800-36855600	Enhancers	Liver	Liver
49	chr6:36854800-36855600	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:36854800-36855600	Enhancers	NHEK	skin

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