Variant report

Variant	rs9359124
Chromosome Location	chr6:76200514-76200515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:76198635..76201636-chr6:76201674..76204880,3	K562	blood:
2	chr6:76198635..76201117-chr6:76201674..76203519,2	K562	blood:

Variant related genes	Relation type
ENSG00000118407	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10943250	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10943255	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12213119	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs485906	0.86[CHB][hapmap]
rs504323	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap]
rs523465	1.00[CHB][hapmap]
rs529383	0.89[CEU][hapmap]
rs567903	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs618239	1.00[CHB][hapmap]
rs619786	0.93[CHB][hapmap];0.84[CHD][hapmap]
rs619920	0.93[CHB][hapmap]
rs6453829	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902898	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931578	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6937154	0.93[CHB][hapmap]
rs72884926	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs775060	1.00[CHB][hapmap]
rs9343313	1.00[CHB][hapmap]
rs9352219	0.93[CHB][hapmap]
rs9359132	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap]
rs9360910	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
8	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv603770	chr6:76200514-76277296	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9359124	SENP6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76183000-76200800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:76189600-76201200	Weak transcription	Lung	lung
3	chr6:76191600-76202200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:76192000-76201400	Weak transcription	GM12878-XiMat	blood
5	chr6:76194000-76201000	Weak transcription	HSMMtube	muscle
6	chr6:76194600-76203200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:76194600-76204600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:76196200-76202600	Weak transcription	Pancreas	Pancrea
9	chr6:76197200-76204200	Active TSS	Stomach Smooth Muscle	stomach
10	chr6:76197800-76204800	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr6:76198000-76200600	Weak transcription	Psoas Muscle	Psoas
12	chr6:76198000-76204000	Active TSS	Colon Smooth Muscle	Colon
13	chr6:76198000-76204200	Active TSS	Right Atrium	heart
14	chr6:76198200-76203200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:76198600-76202800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:76198600-76204000	Active TSS	Aorta	Aorta
17	chr6:76199000-76200600	Weak transcription	Adipose Nuclei	Adipose
18	chr6:76199000-76202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:76199000-76203000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:76199000-76204000	Active TSS	Rectal Smooth Muscle	rectum
21	chr6:76199000-76204400	Active TSS	A549	lung
22	chr6:76199200-76200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:76199200-76202600	Weak transcription	NHLF	lung
24	chr6:76199200-76204200	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:76199400-76203400	Weak transcription	HUVEC	blood vessel
26	chr6:76200000-76204000	Active TSS	Fetal Stomach	stomach
27	chr6:76200200-76200600	Flanking Active TSS	Fetal Heart	heart
28	chr6:76200200-76201200	Flanking Active TSS	Fetal Lung	lung
29	chr6:76200200-76204000	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:76200200-76204400	Active TSS	Right Ventricle	heart
31	chr6:76200400-76200600	Active TSS	Fetal Intestine Large	intestine
32	chr6:76200400-76203800	Active TSS	Left Ventricle	heart
33	chr6:76200400-76203800	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr6:76200400-76204600	Active TSS	Fetal Muscle Leg	muscle

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