Variant report

Variant	rs9371775
Chromosome Location	chr6:150467100-150467101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150460907..150462974-chr6:150465892..150468393,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1107836	0.83[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs2297672	0.92[ASN][1000 genomes]
rs57900356	0.80[EUR][1000 genomes]
rs7755565	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764312	0.86[TSI][hapmap]
rs7769185	0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463600-150467200	Active TSS	Right Atrium	heart
2	chr6:150465000-150467200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:150465000-150467400	Flanking Active TSS	K562	blood
4	chr6:150465600-150467600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150465600-150471600	Weak transcription	Psoas Muscle	Psoas
6	chr6:150465600-150471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:150465800-150467400	Weak transcription	Placenta	Placenta
8	chr6:150465800-150468800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:150466000-150467800	Weak transcription	Right Ventricle	heart
10	chr6:150466200-150467600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150466400-150467200	Flanking Active TSS	HMEC	breast
12	chr6:150466400-150467200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr6:150466400-150467400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:150466400-150467400	Flanking Active TSS	NHEK	skin
15	chr6:150466600-150467200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:150466600-150467400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:150466600-150467600	Bivalent Enhancer	GM12878-XiMat	blood
18	chr6:150466600-150467800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:150466800-150467200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
20	chr6:150466800-150467600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr6:150466800-150467800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:150467000-150467200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:150467000-150467200	Flanking Bivalent TSS/Enh	Fetal Heart	heart
24	chr6:150467000-150467200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:150467000-150467200	Bivalent Enhancer	NH-A	brain
26	chr6:150467000-150467800	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:150467000-150467800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:150467000-150467800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:150467000-150468000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:150467000-150468400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr6:150467000-150470200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:150467000-150470200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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