Variant report

Variant	rs9373579
Chromosome Location	chr6:149197704-149197705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs35992281	0.93[ASN][1000 genomes]
rs66492372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66811524	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66944380	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67037507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67246462	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67910610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377172	0.90[YRI][hapmap]
rs9390621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9498173	0.88[ASN][1000 genomes]
rs9498174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420606	chr6:149197284-149199832	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
2	esv3506346	chr6:149197409-149200232	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3506347	chr6:149197409-149200232	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv9882	chr6:149197483-149200186	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:149191800-149200200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149192000-149200200	Weak transcription	Aorta	Aorta
6	chr6:149192600-149199200	Weak transcription	Spleen	Spleen
7	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:149193000-149199600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:149195000-149199800	Weak transcription	Fetal Thymus	thymus
11	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
12	chr6:149195600-149198200	Enhancers	Fetal Heart	heart
13	chr6:149195800-149205600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:149196000-149203800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:149196200-149198600	Weak transcription	Ovary	ovary
16	chr6:149196200-149199200	Weak transcription	Pancreas	Pancrea
17	chr6:149196200-149202400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:149196200-149202600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:149196200-149203200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:149196200-149204000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:149196200-149208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:149196400-149199800	Weak transcription	Fetal Brain Male	brain
23	chr6:149196400-149200200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:149196400-149200800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:149196400-149205800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:149196400-149206000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:149196400-149209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:149196600-149197800	Weak transcription	NHEK	skin
29	chr6:149197000-149198000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:149197200-149197800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:149197200-149197800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:149197200-149198000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:149197400-149197800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:149197400-149205600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:149197600-149197800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:149197600-149198000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:149197600-149203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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