Variant report

Variant	rs9390622
Chromosome Location	chr6:149196128-149196129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149194314..149196748-chr6:149207020..149209121,2	MCF-7	breast:
2	chr6:149193733..149196299-chr6:149257305..149260279,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs35992281	0.93[ASN][1000 genomes]
rs66492372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66811524	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66944380	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67037507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67246462	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67910610	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373579	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377170	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377171	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377172	0.86[AFR][1000 genomes]
rs9390621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390623	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485336	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9485337	0.88[ASN][1000 genomes]
rs9498173	0.88[ASN][1000 genomes]
rs9498174	0.88[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149187800-149197200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149190000-149197200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:149191800-149197600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:149191800-149200200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:149192000-149200200	Weak transcription	Aorta	Aorta
9	chr6:149192600-149199200	Weak transcription	Spleen	Spleen
10	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:149193000-149199600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:149193800-149196200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:149194400-149196200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:149194400-149196200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:149194400-149196200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:149194600-149196400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:149194600-149196400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:149194600-149196400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:149194800-149196400	Enhancers	HMEC	breast
21	chr6:149194800-149196600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:149194800-149197200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:149195000-149196200	Enhancers	Brain Germinal Matrix	brain
24	chr6:149195000-149196400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:149195000-149199800	Weak transcription	Fetal Thymus	thymus
26	chr6:149195200-149196200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:149195200-149196400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:149195200-149196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
30	chr6:149195400-149196400	Enhancers	NH-A	brain
31	chr6:149195600-149196200	Enhancers	Brain Substantia Nigra	brain
32	chr6:149195600-149196200	Enhancers	Colon Smooth Muscle	Colon
33	chr6:149195600-149196200	Enhancers	Pancreas	Pancrea
34	chr6:149195600-149196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:149195600-149198200	Enhancers	Fetal Heart	heart
36	chr6:149195800-149196200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:149195800-149196200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:149195800-149196200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:149195800-149196200	Enhancers	Brain Angular Gyrus	brain
40	chr6:149195800-149196200	Enhancers	Left Ventricle	heart
41	chr6:149195800-149196200	Enhancers	Stomach Smooth Muscle	stomach
42	chr6:149195800-149196200	Flanking Active TSS	NHEK	skin
43	chr6:149195800-149196400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:149195800-149196400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:149195800-149196400	Enhancers	Adipose Nuclei	Adipose
46	chr6:149195800-149196400	Active TSS	Brain Anterior Caudate	brain
47	chr6:149195800-149196400	Enhancers	Fetal Brain Male	brain
48	chr6:149195800-149196400	Enhancers	Rectal Smooth Muscle	rectum
49	chr6:149195800-149205600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:149196000-149196200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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