Variant report

Variant	rs9485336
Chromosome Location	chr6:149202589-149202590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs35992281	0.88[ASN][1000 genomes]
rs66492372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66811524	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66944380	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67037507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67246462	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67910610	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986634	0.81[ASN][1000 genomes]
rs9373578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377170	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377171	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377172	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9390621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390622	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390623	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9498173	0.93[ASN][1000 genomes]
rs9498174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
7	chr6:149195800-149205600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:149196000-149203800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:149196200-149202600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:149196200-149203200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:149196200-149204000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:149196200-149208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:149196400-149205800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:149196400-149206000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:149196400-149209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:149197400-149205600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149197600-149203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:149197800-149204000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:149197800-149205800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:149198000-149203800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:149198000-149204000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:149198000-149205600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:149199400-149215600	Weak transcription	Spleen	Spleen
24	chr6:149199600-149202600	Weak transcription	Thymus	Thymus
25	chr6:149200400-149204800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:149200600-149203800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:149200800-149206000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:149200800-149206400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:149200800-149208400	Weak transcription	Ovary	ovary
30	chr6:149201000-149210200	Weak transcription	Aorta	Aorta
31	chr6:149201600-149203400	Enhancers	Dnd41	blood
32	chr6:149202000-149203400	Enhancers	Fetal Thymus	thymus
33	chr6:149202400-149203200	Enhancers	Fetal Heart	heart
34	chr6:149202400-149204800	Enhancers	HUES6 Cell Line	embryonic stem cell

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