Variant report

Variant	rs9375492
Chromosome Location	chr6:127545492-127545493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127543549..127546032-chr6:127586949..127589079,2	MCF-7	breast:
2	chr6:127543460..127545516-chr6:127547611..127549681,2	K562	blood:

Variant related genes	Relation type
ENSG00000118518	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs13218061	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2038378	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057223	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2144742	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2144743	0.94[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2180341	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2326567	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3798850	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798852	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798853	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs3798857	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4280986	0.81[EUR][1000 genomes]
rs4486042	0.86[ASN][1000 genomes]
rs4895821	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895822	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895823	0.84[ASN][1000 genomes]
rs4897207	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569477	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569478	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569479	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569480	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569482	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569483	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67371475	0.81[EUR][1000 genomes]
rs6903878	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904520	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6906717	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6910763	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913350	0.80[EUR][1000 genomes]
rs6930849	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6937287	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7449576	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7453272	0.86[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap]
rs7739679	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742161	0.80[EUR][1000 genomes]
rs7751865	0.85[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs7752238	0.80[ASN][1000 genomes]
rs7756336	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7756880	0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs7756884	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs7760652	0.80[EUR][1000 genomes]
rs7760748	0.84[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs7774468	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7775493	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7776136	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs877102	0.90[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs877661	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs910720	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285459	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285460	0.85[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321073	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321074	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321076	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375499	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385419	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388553	0.81[EUR][1000 genomes]
rs9388554	0.80[EUR][1000 genomes]
rs9388555	0.81[EUR][1000 genomes]
rs9388561	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9388568	0.84[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9398836	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398837	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398838	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398839	0.80[ASN][1000 genomes]
rs9398840	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs9398842	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9401950	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401953	0.85[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9375492	TRMT11	cis	parietal	SCAN
rs9375492	LAMA2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127542200-127548400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:127545000-127547600	Weak transcription	Psoas Muscle	Psoas

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