Variant report

Variant	rs6913350
Chromosome Location	chr6:127570560-127570561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1073931	0.82[EUR][1000 genomes]
rs1073932	0.82[EUR][1000 genomes]
rs11961994	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs12175928	0.82[JPT][hapmap]
rs12199451	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs13218061	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1543432	0.80[EUR][1000 genomes]
rs1964130	0.82[EUR][1000 genomes]
rs2038378	0.89[EUR][1000 genomes]
rs2057223	0.86[EUR][1000 genomes]
rs2073298	0.82[JPT][hapmap]
rs2144742	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs2144743	0.86[EUR][1000 genomes]
rs2180341	0.81[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2326567	0.81[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2875972	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798850	0.88[EUR][1000 genomes]
rs3798852	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs3798853	0.81[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs3798857	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs3798859	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs4141423	0.82[JPT][hapmap]
rs4280986	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4371861	0.82[ASN][1000 genomes]
rs4448121	0.80[EUR][1000 genomes]
rs4472373	0.80[EUR][1000 genomes]
rs4486042	0.80[EUR][1000 genomes]
rs4502958	0.81[EUR][1000 genomes]
rs4895821	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895822	0.85[EUR][1000 genomes]
rs4895823	0.83[EUR][1000 genomes]
rs4897207	0.90[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs6569477	0.89[EUR][1000 genomes]
rs6569478	0.88[EUR][1000 genomes]
rs6569479	0.81[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs6569480	0.86[EUR][1000 genomes]
rs6569482	0.86[EUR][1000 genomes]
rs6569483	0.85[EUR][1000 genomes]
rs6569485	0.82[JPT][hapmap]
rs6569486	0.80[EUR][1000 genomes]
rs67371475	0.83[EUR][1000 genomes]
rs6900074	0.82[EUR][1000 genomes]
rs6903878	0.85[EUR][1000 genomes]
rs6904520	0.85[EUR][1000 genomes]
rs6904834	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906717	0.88[EUR][1000 genomes]
rs6909703	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910763	0.86[EUR][1000 genomes]
rs6913424	0.80[EUR][1000 genomes]
rs6916990	0.80[EUR][1000 genomes]
rs6930849	0.86[EUR][1000 genomes]
rs6937287	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7449576	0.86[EUR][1000 genomes]
rs7453272	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs761842	0.82[JPT][hapmap]
rs7739679	0.80[EUR][1000 genomes]
rs7742161	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745944	0.80[EUR][1000 genomes]
rs7751865	0.81[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs7752238	0.83[EUR][1000 genomes]
rs7753913	0.83[EUR][1000 genomes]
rs7756336	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7756880	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs7756884	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs7760652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760748	0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs7764180	0.82[JPT][hapmap]
rs7766942	0.82[EUR][1000 genomes]
rs7770143	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7773484	0.83[EUR][1000 genomes]
rs7774468	0.90[EUR][1000 genomes]
rs7775493	0.86[EUR][1000 genomes]
rs7776136	0.81[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs877102	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs877661	0.88[EUR][1000 genomes]
rs910720	0.86[EUR][1000 genomes]
rs9285459	0.86[EUR][1000 genomes]
rs9285460	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs9321072	0.82[JPT][hapmap]
rs9321073	0.88[EUR][1000 genomes]
rs9321074	0.86[EUR][1000 genomes]
rs9321076	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs9372860	0.80[EUR][1000 genomes]
rs9372862	0.82[JPT][hapmap]
rs9372863	0.81[JPT][hapmap]
rs9372865	0.82[JPT][hapmap]
rs9375492	0.90[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs9375495	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375499	0.86[EUR][1000 genomes]
rs9375500	0.85[JPT][hapmap]
rs9375502	0.82[JPT][hapmap]
rs9375503	0.82[EUR][1000 genomes]
rs9385419	0.88[EUR][1000 genomes]
rs9388553	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388554	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388555	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388558	0.82[JPT][hapmap]
rs9388559	0.82[JPT][hapmap]
rs9388561	0.86[EUR][1000 genomes]
rs9388568	0.80[CEU][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs9398836	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9398837	0.86[EUR][1000 genomes]
rs9398838	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs9398839	0.83[EUR][1000 genomes]
rs9398840	0.81[CEU][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs9398841	0.81[EUR][1000 genomes]
rs9398842	0.81[CEU][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs9401945	0.82[JPT][hapmap]
rs9401949	0.82[JPT][hapmap]
rs9401950	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs9401951	0.83[EUR][1000 genomes]
rs9401952	0.82[EUR][1000 genomes]
rs9401953	0.81[CEU][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6913350	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127570000-127570800	Enhancers	Fetal Brain Male	brain
2	chr6:127570200-127570800	Enhancers	Fetal Brain Female	brain

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