Variant report

Variant	rs7770143
Chromosome Location	chr6:127578996-127578997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2875972	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4280986	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4895821	0.85[AMR][1000 genomes]
rs6904834	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6909703	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6913350	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7742161	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7760652	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs877102	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9375495	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9388553	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9388554	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9388555	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398836	0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7770143	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127571000-127587400	Weak transcription	Psoas Muscle	Psoas
2	chr6:127573000-127586800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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