Variant report

Variant	rs2875972
Chromosome Location	chr6:127585522-127585523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13218061	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2038378	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2057223	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2144742	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2144743	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2180341	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2326567	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3756996	0.82[AMR][1000 genomes]
rs3798850	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3798852	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3798857	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4280986	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895821	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4895822	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4895823	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4897207	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6569477	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6569478	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6569479	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6569480	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6569482	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6569483	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67371475	0.81[EUR][1000 genomes]
rs6903878	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6904520	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6904834	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6906717	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6909703	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6910763	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6913350	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930849	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6937287	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7449576	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7742161	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7752238	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7753913	0.80[EUR][1000 genomes]
rs7756336	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7760652	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7770143	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7773484	0.80[EUR][1000 genomes]
rs7774468	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7775493	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7776136	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs877102	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs877661	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs910720	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9285459	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9285460	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9321073	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9321074	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9321076	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9375495	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9375499	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9385419	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9388553	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388554	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388555	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388561	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9398836	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9398837	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9398838	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9398839	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9398840	0.80[EUR][1000 genomes]
rs9401950	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401951	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2875972	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127571000-127587400	Weak transcription	Psoas Muscle	Psoas
2	chr6:127573000-127586800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:127584000-127586800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:127584200-127587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:127585200-127586200	Weak transcription	Fetal Lung	lung
6	chr6:127585200-127587000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links