Variant report

Variant	rs9398836
Chromosome Location	chr6:127576497-127576498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1073931	0.89[EUR][1000 genomes]
rs1073932	0.89[EUR][1000 genomes]
rs10872312	0.80[EUR][1000 genomes]
rs13218061	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1543432	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1964130	0.89[EUR][1000 genomes]
rs2038378	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057223	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2144742	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2144743	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2180341	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281491	0.83[EUR][1000 genomes]
rs2326567	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2875972	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3756996	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3798850	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798852	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798857	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4280986	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4448121	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4472373	0.88[EUR][1000 genomes]
rs4486042	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895822	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895823	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4897207	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569477	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569478	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569479	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569480	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569482	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569483	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6569486	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67371475	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6900074	0.89[EUR][1000 genomes]
rs6903878	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904520	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6904630	0.87[EUR][1000 genomes]
rs6904834	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6906717	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909703	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6910763	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913350	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6913424	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6916990	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6930849	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6937287	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7449576	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739679	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742161	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7745944	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7751865	0.89[EUR][1000 genomes]
rs7752238	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7753913	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756336	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7756880	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7756884	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7760652	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7760748	0.89[EUR][1000 genomes]
rs7766942	0.89[EUR][1000 genomes]
rs7770143	0.85[AMR][1000 genomes]
rs7771923	0.85[EUR][1000 genomes]
rs7773484	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7774468	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7775493	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7776136	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs877102	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs877661	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs910720	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285459	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285460	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321073	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321074	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321076	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321079	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9372860	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375492	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375495	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9375499	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375501	0.82[EUR][1000 genomes]
rs9375503	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9385419	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388553	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9388554	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9388555	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9388561	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9388568	0.89[EUR][1000 genomes]
rs9388571	0.80[EUR][1000 genomes]
rs9398837	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398838	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398839	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9398840	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9398841	0.88[EUR][1000 genomes]
rs9398842	0.89[EUR][1000 genomes]
rs9401950	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401951	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9401952	0.89[EUR][1000 genomes]
rs9401953	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9398836	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127571000-127587400	Weak transcription	Psoas Muscle	Psoas
2	chr6:127573000-127586800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:127576400-127576800	Enhancers	HepG2	liver

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