Variant report

Variant	rs9376004
Chromosome Location	chr6:134357045-134357046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134353246..134355174-chr6:134356694..134358251,2	K562	blood:
2	chr6:134355652..134357215-chr6:134361565..134364070,2	K562	blood:
3	chr6:134355846..134358817-chr6:134361832..134364274,2	K562	blood:
4	chr6:134349888..134351478-chr6:134356973..134359120,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13191718	0.81[EUR][1000 genomes]
rs17063315	1.00[CEU][hapmap]
rs6569921	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932884	0.87[EUR][1000 genomes]
rs731712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs764515	0.84[EUR][1000 genomes]
rs7739733	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9373078	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376005	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9389132	0.81[ASN][1000 genomes]
rs9389133	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389134	0.84[EUR][1000 genomes]
rs9402561	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
2	chr6:134342000-134361600	Weak transcription	Gastric	stomach
3	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
10	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:134354200-134357800	Enhancers	Fetal Lung	lung
12	chr6:134354600-134359200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:134354800-134357200	Enhancers	K562	blood
14	chr6:134355600-134357800	Enhancers	Fetal Heart	heart
15	chr6:134355600-134357800	Enhancers	HMEC	breast
16	chr6:134355800-134357200	Enhancers	Lung	lung
17	chr6:134355800-134357800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:134355800-134357800	Enhancers	Brain Anterior Caudate	brain
19	chr6:134355800-134357800	Enhancers	Right Atrium	heart
20	chr6:134355800-134357800	Enhancers	Stomach Mucosa	stomach
21	chr6:134355800-134358000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:134355800-134359000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:134356000-134357200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:134356000-134357600	Enhancers	HSMMtube	muscle
25	chr6:134356000-134357800	Enhancers	Brain Angular Gyrus	brain
26	chr6:134356000-134357800	Enhancers	HSMM	muscle
27	chr6:134356000-134358200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:134356200-134357200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:134356200-134357200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:134356200-134357600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:134356400-134357200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:134356400-134357200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:134356400-134357200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:134356400-134357200	Enhancers	Duodenum Mucosa	Duodenum
35	chr6:134356400-134357200	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:134356400-134357400	Enhancers	NHLF	lung
37	chr6:134356400-134357600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:134356400-134357600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:134356400-134357600	Enhancers	Brain Germinal Matrix	brain
40	chr6:134356400-134357600	Enhancers	A549	lung
41	chr6:134356400-134357600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr6:134356400-134357600	Enhancers	NH-A	brain
43	chr6:134356400-134357600	Enhancers	Osteobl	bone
44	chr6:134356400-134357800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:134356600-134357200	Enhancers	Fetal Thymus	thymus
46	chr6:134356600-134357200	Enhancers	NHDF-Ad	bronchial
47	chr6:134356600-134357600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:134356600-134357600	Enhancers	HepG2	liver
49	chr6:134356600-134357800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:134356600-134362400	Weak transcription	Psoas Muscle	Psoas

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