Variant report

Variant	rs9402561
Chromosome Location	chr6:134361077-134361078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134357410..134358910-chr6:134359060..134361120,2	K562	blood:
2	chr6:134360758..134363331-chr6:134372842..134375718,2	K562	blood:

Variant related genes	Relation type
ENSG00000146411	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13191718	1.00[EUR][1000 genomes]
rs13197369	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13205743	0.84[EUR][1000 genomes]
rs13220797	0.84[EUR][1000 genomes]
rs17224464	0.84[EUR][1000 genomes]
rs17822815	0.84[EUR][1000 genomes]
rs34180332	0.96[EUR][1000 genomes]
rs6569921	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6907633	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6932884	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs731712	0.81[EUR][1000 genomes]
rs73550553	0.80[EUR][1000 genomes]
rs764515	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739733	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373078	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9375998	0.80[EUR][1000 genomes]
rs9376001	0.80[EUR][1000 genomes]
rs9376004	0.81[EUR][1000 genomes]
rs9376005	0.81[ASN][1000 genomes]
rs9389131	0.89[ASN][1000 genomes]
rs9389132	0.97[ASN][1000 genomes]
rs9389133	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9389134	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
2	chr6:134342000-134361600	Weak transcription	Gastric	stomach
3	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
9	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:134356600-134362400	Weak transcription	Psoas Muscle	Psoas
11	chr6:134357000-134369000	Weak transcription	Aorta	Aorta
12	chr6:134357200-134362000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:134357200-134362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:134357200-134362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:134357200-134362400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:134357200-134362400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:134357200-134362400	Weak transcription	K562	blood
18	chr6:134357200-134365400	Weak transcription	Lung	lung
19	chr6:134357200-134368800	Weak transcription	Left Ventricle	heart
20	chr6:134357600-134361400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:134357600-134361600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:134357600-134361600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:134357600-134362000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:134357600-134362000	Weak transcription	Osteobl	bone
25	chr6:134357600-134362200	Weak transcription	NH-A	brain
26	chr6:134357600-134362400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:134357800-134361600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:134357800-134361600	Weak transcription	HMEC	breast
29	chr6:134357800-134362000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:134357800-134362000	Weak transcription	NHEK	skin
31	chr6:134357800-134366000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:134357800-134368600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:134357800-134368800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:134358000-134362000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:134359200-134365000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:134359600-134361800	Weak transcription	Hela-S3	cervix
37	chr6:134360800-134361600	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:134361000-134370000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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