Variant report

Variant	rs9376001
Chromosome Location	chr6:134327863-134327864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134326098..134329079-chr6:134333426..134337217,3	MCF-7	breast:
2	chr6:134315554..134318133-chr6:134326472..134328419,3	MCF-7	breast:
3	chr6:134322753..134327891-chr6:134329943..134333347,6	K562	blood:
4	chr6:134326075..134328376-chr6:134347182..134349156,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191718	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs13197369	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13205743	0.95[EUR][1000 genomes]
rs13220797	0.95[EUR][1000 genomes]
rs17224464	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17822815	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2627239	0.86[CHB][hapmap];0.83[YRI][hapmap]
rs2811676	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs34180332	0.84[EUR][1000 genomes]
rs60814233	0.86[ASN][1000 genomes]
rs6911375	1.00[MEX][hapmap]
rs6916329	1.00[CEU][hapmap]
rs6925803	1.00[MEX][hapmap]
rs6932884	0.84[ASN][1000 genomes]
rs73550553	1.00[EUR][1000 genomes]
rs764515	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7739733	0.82[ASN][1000 genomes]
rs7743546	1.00[MEX][hapmap]
rs9375998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389131	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9389132	0.82[ASN][1000 genomes]
rs9389133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9389134	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9402561	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
3	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
6	chr6:134314200-134328000	Weak transcription	Lung	lung
7	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:134315200-134328400	Weak transcription	Fetal Lung	lung
9	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
10	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
11	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
12	chr6:134317000-134328000	Weak transcription	Gastric	stomach
13	chr6:134317000-134335200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:134320000-134328000	Weak transcription	Pancreas	Pancrea
16	chr6:134321000-134328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:134324400-134328000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:134324400-134339400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:134324600-134341800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:134325000-134328000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:134325000-134341800	Weak transcription	Aorta	Aorta
22	chr6:134325000-134341800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:134325000-134349600	Weak transcription	Left Ventricle	heart
24	chr6:134326200-134328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:134326400-134339000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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