Variant report

Variant	rs9375998
Chromosome Location	chr6:134324142-134324143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134317036..134319141-chr6:134322847..134324478,2	MCF-7	breast:
2	chr6:134317498..134321618-chr6:134323744..134327295,4	MCF-7	breast:
3	chr6:134317830..134320441-chr6:134322553..134326763,4	K562	blood:
4	chr6:134322753..134327891-chr6:134329943..134333347,6	K562	blood:
5	chr6:134307630..134309585-chr6:134323063..134324734,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13191718	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs13197369	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13205743	0.95[EUR][1000 genomes]
rs13220797	0.95[EUR][1000 genomes]
rs17224464	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17822815	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2627239	0.83[CHB][hapmap]
rs2811676	0.83[CHB][hapmap]
rs34180332	0.84[EUR][1000 genomes]
rs60814233	0.86[ASN][1000 genomes]
rs6916329	1.00[CEU][hapmap]
rs6932884	0.84[ASN][1000 genomes]
rs73550553	1.00[EUR][1000 genomes]
rs764515	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7739733	0.82[ASN][1000 genomes]
rs9376001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389131	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9389132	0.82[ASN][1000 genomes]
rs9389133	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9389134	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9402561	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
3	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
7	chr6:134314200-134324200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:134314200-134328000	Weak transcription	Lung	lung
9	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:134315200-134328400	Weak transcription	Fetal Lung	lung
11	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
12	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
13	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
14	chr6:134317000-134328000	Weak transcription	Gastric	stomach
15	chr6:134317000-134335200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:134320000-134328000	Weak transcription	Pancreas	Pancrea
18	chr6:134320400-134324600	Weak transcription	Liver	Liver
19	chr6:134321000-134328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:134322000-134324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:134322200-134324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:134322400-134324200	Weak transcription	Left Ventricle	heart
23	chr6:134323200-134324200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:134323200-134324400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:134323200-134324600	Enhancers	Brain Angular Gyrus	brain
26	chr6:134323200-134325200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:134323600-134324200	Enhancers	HSMMtube	muscle
28	chr6:134323600-134324600	Enhancers	Fetal Brain Male	brain
29	chr6:134323600-134324800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:134323600-134324800	Enhancers	K562	blood
31	chr6:134323600-134325000	Enhancers	Osteobl	bone
32	chr6:134323600-134325400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:134323800-134324400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:134323800-134324800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:134323800-134324800	Enhancers	Brain Cingulate Gyrus	brain
36	chr6:134323800-134325000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:134323800-134325000	Flanking Active TSS	NH-A	brain
38	chr6:134323800-134326200	Enhancers	HSMM	muscle
39	chr6:134324000-134324200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:134324000-134324200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:134324000-134324200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:134324000-134324200	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:134324000-134324800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:134324000-134324800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:134324000-134324800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:134324000-134324800	Strong transcription	Aorta	Aorta
47	chr6:134324000-134324800	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr6:134324000-134324800	Enhancers	Fetal Muscle Leg	muscle
49	chr6:134324000-134325000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:134324000-134325000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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