Variant report

Variant	rs13220797
Chromosome Location	chr6:134337153-134337154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134336827..134339665-chr6:134361566..134364171,2	K562	blood:
2	chr6:134337078..134339958-chr6:134343269..134345999,2	MCF-7	breast:
3	chr6:134335558..134337686-chr6:134351393..134353887,2	MCF-7	breast:
4	chr6:134329368..134332066-chr6:134336852..134338847,2	K562	blood:
5	chr6:134336679..134338523-chr6:134383929..134386286,2	MCF-7	breast:
6	chr6:134310840..134313274-chr6:134336686..134339271,2	K562	blood:
7	chr6:134326098..134329079-chr6:134333426..134337217,3	MCF-7	breast:
8	chr6:134336380..134337895-chr6:134357599..134359145,2	MCF-7	breast:
9	chr6:134297385..134300125-chr6:134336885..134339379,2	MCF-7	breast:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13191718	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13197369	0.96[EUR][1000 genomes]
rs13205743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17224464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17822815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34180332	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73550553	0.95[EUR][1000 genomes]
rs764515	0.81[EUR][1000 genomes]
rs7739733	0.81[EUR][1000 genomes]
rs9375998	0.95[EUR][1000 genomes]
rs9376001	0.95[EUR][1000 genomes]
rs9389133	0.81[EUR][1000 genomes]
rs9389134	0.81[EUR][1000 genomes]
rs9402561	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
4	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
5	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
6	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:134324400-134339400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:134324600-134341800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:134325000-134341800	Weak transcription	Aorta	Aorta
10	chr6:134325000-134341800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:134325000-134349600	Weak transcription	Left Ventricle	heart
12	chr6:134326400-134339000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
14	chr6:134328800-134349400	Weak transcription	Fetal Lung	lung
15	chr6:134329400-134338400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:134333200-134341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:134335200-134339800	Enhancers	Fetal Intestine Large	intestine
18	chr6:134335200-134340600	Enhancers	Fetal Intestine Small	intestine
19	chr6:134336200-134345600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:134336400-134337200	Enhancers	Psoas Muscle	Psoas
21	chr6:134336400-134337400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134336400-134339400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:134336400-134341600	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:134336400-134353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:134336800-134337200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134336800-134349600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:134337000-134337200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:134337000-134344200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links