Variant report

Variant	rs9389133
Chromosome Location	chr6:134357627-134357628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134353246..134355174-chr6:134356694..134358251,2	K562	blood:
2	chr6:134355846..134358817-chr6:134361832..134364274,2	K562	blood:
3	chr6:134349888..134351478-chr6:134356973..134359120,2	MCF-7	breast:
4	chr6:134357410..134358910-chr6:134359060..134361120,2	K562	blood:
5	chr6:134336380..134337895-chr6:134357599..134359145,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13191718	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13197369	0.93[ASN][1000 genomes]
rs13205743	0.81[EUR][1000 genomes]
rs13220797	0.81[EUR][1000 genomes]
rs17224464	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17822815	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs34180332	0.92[EUR][1000 genomes]
rs6569921	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6907633	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6916329	1.00[CEU][hapmap]
rs6932884	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs731712	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs764515	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7739733	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373078	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9375998	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9376001	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9376004	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376005	0.81[ASN][1000 genomes]
rs9389131	0.83[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9389132	1.00[ASN][1000 genomes]
rs9389134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402561	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
2	chr6:134342000-134361600	Weak transcription	Gastric	stomach
3	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
9	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:134354200-134357800	Enhancers	Fetal Lung	lung
11	chr6:134354600-134359200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:134355600-134357800	Enhancers	Fetal Heart	heart
13	chr6:134355600-134357800	Enhancers	HMEC	breast
14	chr6:134355800-134357800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:134355800-134357800	Enhancers	Brain Anterior Caudate	brain
16	chr6:134355800-134357800	Enhancers	Right Atrium	heart
17	chr6:134355800-134357800	Enhancers	Stomach Mucosa	stomach
18	chr6:134355800-134358000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:134355800-134359000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:134356000-134357800	Enhancers	Brain Angular Gyrus	brain
21	chr6:134356000-134357800	Enhancers	HSMM	muscle
22	chr6:134356000-134358200	Enhancers	Fetal Muscle Leg	muscle
23	chr6:134356400-134357800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:134356600-134357800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:134356600-134362400	Weak transcription	Psoas Muscle	Psoas
26	chr6:134357000-134357800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:134357000-134357800	Enhancers	NHEK	skin
28	chr6:134357000-134369000	Weak transcription	Aorta	Aorta
29	chr6:134357200-134357800	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:134357200-134358000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:134357200-134358400	Weak transcription	Hela-S3	cervix
32	chr6:134357200-134358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:134357200-134362000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:134357200-134362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:134357200-134362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:134357200-134362400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:134357200-134362400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:134357200-134362400	Weak transcription	K562	blood
39	chr6:134357200-134365400	Weak transcription	Lung	lung
40	chr6:134357200-134368800	Weak transcription	Left Ventricle	heart
41	chr6:134357400-134357800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr6:134357600-134358800	Weak transcription	HepG2	liver
43	chr6:134357600-134359000	Weak transcription	Fetal Intestine Small	intestine
44	chr6:134357600-134360800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr6:134357600-134361400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:134357600-134361600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:134357600-134361600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:134357600-134362000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:134357600-134362000	Weak transcription	Osteobl	bone
50	chr6:134357600-134362200	Weak transcription	NH-A	brain

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