Variant report

Variant	rs13197369
Chromosome Location	chr6:134351220-134351221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134344567..134346471-chr6:134350446..134352448,2	MCF-7	breast:
2	chr6:134345844..134348378-chr6:134349691..134351892,2	K562	blood:
3	chr6:134349888..134351478-chr6:134356973..134359120,2	MCF-7	breast:
4	chr6:134276652..134279783-chr6:134349366..134352805,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13191718	0.80[EUR][1000 genomes]
rs13205743	0.96[EUR][1000 genomes]
rs13220797	0.96[EUR][1000 genomes]
rs17224464	0.96[EUR][1000 genomes]
rs17822815	0.96[EUR][1000 genomes]
rs34180332	0.84[EUR][1000 genomes]
rs6932884	0.94[ASN][1000 genomes]
rs73550553	0.91[EUR][1000 genomes]
rs764515	0.94[ASN][1000 genomes]
rs7739733	0.93[ASN][1000 genomes]
rs9375998	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376001	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389131	0.99[ASN][1000 genomes]
rs9389132	0.93[ASN][1000 genomes]
rs9389133	0.93[ASN][1000 genomes]
rs9389134	0.90[ASN][1000 genomes]
rs9402561	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
2	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
4	chr6:134336400-134353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:134339200-134356000	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:134342000-134361600	Weak transcription	Gastric	stomach
7	chr6:134342200-134355600	Weak transcription	Fetal Heart	heart
8	chr6:134342800-134352000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:134343200-134355800	Weak transcription	Lung	lung
10	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:134348200-134354600	Weak transcription	Pancreas	Pancrea
13	chr6:134348200-134356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:134348400-134356000	Weak transcription	Psoas Muscle	Psoas
15	chr6:134348600-134356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:134348600-134356400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:134348600-134356800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:134348800-134351800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:134349000-134351600	Weak transcription	Fetal Stomach	stomach
21	chr6:134349000-134352400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:134349600-134352000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:134350000-134351600	Enhancers	A549	lung
24	chr6:134350000-134356000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:134350400-134351600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:134350400-134352000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:134350600-134351600	Enhancers	Brain Hippocampus Middle	brain
29	chr6:134350600-134351600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:134350600-134351600	Enhancers	Osteobl	bone
31	chr6:134350600-134352200	Enhancers	Fetal Lung	lung
32	chr6:134350600-134353400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:134350600-134356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:134350800-134351600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:134350800-134351600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:134350800-134351600	Enhancers	NHEK	skin
39	chr6:134350800-134351800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:134350800-134351800	Enhancers	HMEC	breast
41	chr6:134350800-134356000	Weak transcription	Aorta	Aorta
42	chr6:134350800-134356600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:134350800-134356800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:134351000-134351600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:134351000-134351600	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:134351000-134351600	Enhancers	HUVEC	blood vessel
47	chr6:134351000-134351600	Enhancers	NH-A	brain
48	chr6:134351000-134351600	Enhancers	NHDF-Ad	bronchial
49	chr6:134351000-134353600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:134351200-134351400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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