Variant report

Variant	rs34180332
Chromosome Location	chr6:134352685-134352686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134335558..134337686-chr6:134351393..134353887,2	MCF-7	breast:
2	chr6:134351987..134354172-chr6:134373836..134375397,2	K562	blood:
3	chr6:134276652..134279783-chr6:134349366..134352805,3	K562	blood:
4	chr6:134351702..134354172-chr6:134372536..134375397,3	K562	blood:
5	chr6:134341566..134343358-chr6:134351242..134353788,2	K562	blood:

Variant related genes	Relation type
ENSG00000146411	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13191718	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13197369	0.84[EUR][1000 genomes]
rs13205743	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13220797	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17224464	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17822815	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6932884	0.89[EUR][1000 genomes]
rs73550553	0.84[EUR][1000 genomes]
rs764515	0.92[EUR][1000 genomes]
rs7739733	0.92[EUR][1000 genomes]
rs9375998	0.84[EUR][1000 genomes]
rs9376001	0.84[EUR][1000 genomes]
rs9389133	0.92[EUR][1000 genomes]
rs9389134	0.92[EUR][1000 genomes]
rs9402561	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3416730	chr6:134351795-134354273	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
2	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
4	chr6:134336400-134353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:134339200-134356000	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:134342000-134361600	Weak transcription	Gastric	stomach
7	chr6:134342200-134355600	Weak transcription	Fetal Heart	heart
8	chr6:134343200-134355800	Weak transcription	Lung	lung
9	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:134348200-134354600	Weak transcription	Pancreas	Pancrea
12	chr6:134348200-134356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:134348400-134356000	Weak transcription	Psoas Muscle	Psoas
14	chr6:134348600-134356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:134348600-134356400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:134348600-134356800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:134350000-134356000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:134350600-134353400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:134350600-134356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:134350800-134356000	Weak transcription	Aorta	Aorta
25	chr6:134350800-134356600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:134350800-134356800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:134351000-134353600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:134351600-134352800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:134351600-134353400	Enhancers	K562	blood
30	chr6:134351600-134355600	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:134351600-134355800	Weak transcription	Brain Anterior Caudate	brain
32	chr6:134351600-134355800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:134351600-134356000	Weak transcription	Brain Angular Gyrus	brain
34	chr6:134351600-134356000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:134351600-134356200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:134351600-134356200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:134351600-134356400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:134351600-134356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:134351600-134356400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:134351600-134356400	Weak transcription	NHLF	lung
41	chr6:134351600-134356600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:134351600-134356600	Weak transcription	NHDF-Ad	bronchial
43	chr6:134351600-134356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:134351600-134356800	Weak transcription	Left Ventricle	heart
45	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
46	chr6:134352200-134353400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:134352200-134353400	Enhancers	HMEC	breast
48	chr6:134352200-134354200	Weak transcription	Fetal Lung	lung
49	chr6:134352400-134353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:134352600-134353000	Enhancers	NHEK	skin

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