Variant report

Variant	rs17822815
Chromosome Location	chr6:134343148-134343149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134278042..134279721-chr6:134341535..134344135,2	K562	blood:
2	chr6:134341566..134343358-chr6:134351242..134353788,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13191718	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13197369	0.96[EUR][1000 genomes]
rs13205743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13220797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17224464	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34180332	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73550553	0.95[EUR][1000 genomes]
rs764515	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7739733	0.81[EUR][1000 genomes]
rs9375998	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9376001	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9389133	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9389134	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9402561	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
3	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:134325000-134349600	Weak transcription	Left Ventricle	heart
5	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
6	chr6:134328800-134349400	Weak transcription	Fetal Lung	lung
7	chr6:134336200-134345600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:134336400-134353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:134336800-134349600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:134337000-134344200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:134337400-134347800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:134339200-134356000	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:134339800-134347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:134339800-134350400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:134340000-134345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:134340200-134347800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:134340200-134347800	Weak transcription	NH-A	brain
18	chr6:134340200-134349200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:134340600-134348000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:134341600-134343200	Enhancers	Brain Hippocampus Middle	brain
21	chr6:134341800-134343200	Enhancers	Brain Angular Gyrus	brain
22	chr6:134341800-134343600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:134342000-134343200	Enhancers	Brain Substantia Nigra	brain
24	chr6:134342000-134349200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:134342000-134361600	Weak transcription	Gastric	stomach
26	chr6:134342200-134343400	Enhancers	Primary T cells from cord blood	blood
27	chr6:134342200-134343400	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:134342200-134346000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:134342200-134347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:134342200-134347800	Weak transcription	Aorta	Aorta
31	chr6:134342200-134347800	Weak transcription	Psoas Muscle	Psoas
32	chr6:134342200-134349400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:134342200-134349600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:134342200-134355600	Weak transcription	Fetal Heart	heart
35	chr6:134342400-134343400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:134342400-134343400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:134342400-134351200	Weak transcription	Right Ventricle	heart
38	chr6:134342600-134343200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:134342600-134346000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:134342600-134349400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:134342800-134343200	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr6:134342800-134344600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:134342800-134352000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:134343000-134343200	Enhancers	Lung	lung
45	chr6:134343000-134343200	Enhancers	Pancreas	Pancrea
46	chr6:134343000-134343400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:134343000-134343400	Enhancers	Primary B cells from peripheral blood	blood
48	chr6:134343000-134343400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:134343000-134343400	Enhancers	K562	blood

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