Variant report

Variant	rs9380638
Chromosome Location	chr6:37048239-37048240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37035293..37037113-chr6:37048095..37050950,2	K562	blood:
2	chr6:37042795..37044997-chr6:37046784..37049311,3	MCF-7	breast:
3	chr6:37045453..37048349-chr6:37049676..37051329,3	K562	blood:
4	chr6:37027012..37030167-chr6:37045267..37048455,4	K562	blood:
5	chr6:37047930..37050667-chr6:37174268..37176319,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10223714	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2149336	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4711483	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4714035	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6457978	0.81[AMR][1000 genomes]
rs6457979	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6457980	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7748291	0.82[AMR][1000 genomes]
rs7751821	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7774073	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394402	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394403	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462258	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470469	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37040000-37051200	Weak transcription	A549	lung
2	chr6:37045400-37049600	Weak transcription	Liver	Liver
3	chr6:37045800-37049600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:37045800-37049600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:37045800-37050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:37045800-37051000	Weak transcription	Colonic Mucosa	Colon
7	chr6:37045800-37051000	Weak transcription	Left Ventricle	heart
8	chr6:37045800-37051000	Weak transcription	Lung	lung
9	chr6:37045800-37051000	Weak transcription	Right Atrium	heart
10	chr6:37045800-37051400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:37046000-37051000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37046000-37051000	Weak transcription	Esophagus	oesophagus
14	chr6:37046000-37051000	Weak transcription	Right Ventricle	heart
15	chr6:37046000-37051200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:37046200-37048800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:37046200-37051000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:37046200-37051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:37046200-37051000	Weak transcription	NHEK	skin
20	chr6:37046400-37049600	Weak transcription	Adipose Nuclei	Adipose
21	chr6:37046400-37050400	Weak transcription	Placenta	Placenta
22	chr6:37046400-37050600	Weak transcription	Ovary	ovary
23	chr6:37046400-37050600	Weak transcription	HMEC	breast
24	chr6:37046400-37051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:37046400-37051000	Weak transcription	Fetal Lung	lung
26	chr6:37046600-37051000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:37046800-37050600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:37046800-37050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:37046800-37051200	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:37047000-37049800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:37047000-37051000	Weak transcription	Fetal Stomach	stomach
32	chr6:37047000-37051000	Weak transcription	Osteobl	bone
33	chr6:37047000-37051200	Weak transcription	NHLF	lung
34	chr6:37047200-37051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:37047600-37050800	Enhancers	HepG2	liver
36	chr6:37047600-37051000	Weak transcription	NHDF-Ad	bronchial
37	chr6:37047800-37050600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:37048000-37049000	Weak transcription	K562	blood
39	chr6:37048000-37050400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:37048200-37048400	Enhancers	Spleen	Spleen

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