Variant report

Variant	rs9462258
Chromosome Location	chr6:37047464-37047465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37040469..37042667-chr6:37045350..37047958,2	MCF-7	breast:
2	chr6:37042795..37044997-chr6:37046784..37049311,3	MCF-7	breast:
3	chr6:37045453..37048349-chr6:37049676..37051329,3	K562	blood:
4	chr6:37027012..37030167-chr6:37045267..37048455,4	K562	blood:
5	chr6:37039829..37042150-chr6:37044091..37047669,4	K562	blood:
6	chr6:37045369..37048087-chr6:37049023..37051325,2	K562	blood:
7	chr6:37046198..37048052-chr6:37138621..37141447,2	K562	blood:
8	chr6:37043566..37047908-chr6:37051801..37055072,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10223714	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1228575	0.81[ASN][1000 genomes]
rs1753301	0.81[ASN][1000 genomes]
rs2025998	0.81[ASN][1000 genomes]
rs2094575	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2149336	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4317401	0.81[ASN][1000 genomes]
rs4711482	0.81[ASN][1000 genomes]
rs4711483	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714035	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6457974	0.81[ASN][1000 genomes]
rs6457976	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6457978	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457979	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457980	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6917684	0.80[EUR][1000 genomes]
rs6924660	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6939869	0.81[ASN][1000 genomes]
rs7748291	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7750403	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7750614	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7750717	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7751821	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7770544	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7774073	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs831484	0.81[ASN][1000 genomes]
rs831487	0.81[ASN][1000 genomes]
rs831489	0.81[ASN][1000 genomes]
rs831491	0.81[ASN][1000 genomes]
rs913499	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs913500	0.82[ASN][1000 genomes]
rs9296208	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9366927	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380637	0.81[ASN][1000 genomes]
rs9380638	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394401	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394402	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394403	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470469	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37040000-37051200	Weak transcription	A549	lung
2	chr6:37042800-37047600	Weak transcription	HepG2	liver
3	chr6:37044800-37047600	Enhancers	NHDF-Ad	bronchial
4	chr6:37045000-37048000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:37045400-37049600	Weak transcription	Liver	Liver
6	chr6:37045800-37047800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:37045800-37048200	Weak transcription	Spleen	Spleen
8	chr6:37045800-37049600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:37045800-37049600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:37045800-37050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:37045800-37051000	Weak transcription	Colonic Mucosa	Colon
12	chr6:37045800-37051000	Weak transcription	Left Ventricle	heart
13	chr6:37045800-37051000	Weak transcription	Lung	lung
14	chr6:37045800-37051000	Weak transcription	Right Atrium	heart
15	chr6:37045800-37051400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:37046000-37051000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:37046000-37051000	Weak transcription	Esophagus	oesophagus
19	chr6:37046000-37051000	Weak transcription	Right Ventricle	heart
20	chr6:37046000-37051200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:37046200-37048800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:37046200-37051000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:37046200-37051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:37046200-37051000	Weak transcription	NHEK	skin
25	chr6:37046400-37049600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:37046400-37050400	Weak transcription	Placenta	Placenta
27	chr6:37046400-37050600	Weak transcription	Ovary	ovary
28	chr6:37046400-37050600	Weak transcription	HMEC	breast
29	chr6:37046400-37051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:37046400-37051000	Weak transcription	Fetal Lung	lung
31	chr6:37046600-37051000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:37046800-37050600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:37046800-37050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:37046800-37051200	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:37047000-37049800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:37047000-37051000	Weak transcription	Fetal Stomach	stomach
37	chr6:37047000-37051000	Weak transcription	Osteobl	bone
38	chr6:37047000-37051200	Weak transcription	NHLF	lung
39	chr6:37047200-37051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:37047400-37048000	Enhancers	K562	blood

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