Variant report

Variant	rs7770544
Chromosome Location	chr6:37036699-37036700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37035293..37037113-chr6:37048095..37050950,2	K562	blood:
2	chr6:37027081..37028694-chr6:37035227..37037998,3	K562	blood:
3	chr6:37024224..37026313-chr6:37036229..37037953,2	MCF-7	breast:
4	chr6:37014703..37016638-chr6:37036621..37038696,2	K562	blood:
5	chr6:37035193..37037363-chr6:37076365..37078969,2	K562	blood:
6	chr6:37025139..37026735-chr6:37035518..37038380,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10223714	0.88[ASN][1000 genomes]
rs1224491	0.82[ASN][1000 genomes]
rs1228575	0.83[ASN][1000 genomes]
rs1724094	0.82[ASN][1000 genomes]
rs1753301	0.83[ASN][1000 genomes]
rs2025998	0.83[ASN][1000 genomes]
rs2094575	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2149336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317401	0.83[ASN][1000 genomes]
rs4711482	0.83[ASN][1000 genomes]
rs4711483	0.83[ASN][1000 genomes]
rs6457974	0.83[ASN][1000 genomes]
rs6457976	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6457978	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457979	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457980	0.88[ASN][1000 genomes]
rs6924660	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6939869	0.83[ASN][1000 genomes]
rs7748291	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7750403	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7750614	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7750717	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7751821	0.88[ASN][1000 genomes]
rs7774073	0.86[ASN][1000 genomes]
rs831484	0.83[ASN][1000 genomes]
rs831487	0.83[ASN][1000 genomes]
rs831489	0.83[ASN][1000 genomes]
rs831491	0.83[ASN][1000 genomes]
rs831497	0.80[ASN][1000 genomes]
rs831499	0.80[ASN][1000 genomes]
rs831500	0.80[ASN][1000 genomes]
rs913499	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs913500	0.83[ASN][1000 genomes]
rs9296208	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9366927	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380637	0.83[ASN][1000 genomes]
rs9394401	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394402	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394403	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462258	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470469	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37028200-37039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:37028200-37039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:37028400-37039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:37029800-37037400	Weak transcription	Spleen	Spleen
6	chr6:37030400-37039600	Weak transcription	A549	lung
7	chr6:37032800-37039200	Weak transcription	K562	blood
8	chr6:37033800-37036800	Enhancers	HepG2	liver
9	chr6:37035800-37037800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:37036000-37037000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:37036200-37036800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:37036200-37037200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:37036200-37037400	Enhancers	Fetal Muscle Leg	muscle
14	chr6:37036400-37037000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37036400-37037200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:37036400-37037200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:37036400-37037200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:37036400-37037200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:37036400-37037400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37036400-37037600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:37036400-37038400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:37036400-37039200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:37036400-37039400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:37036400-37039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:37036600-37036800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:37036600-37036800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:37036600-37037200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:37036600-37041800	Weak transcription	Right Atrium	heart

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