Variant report

Variant	rs9296208
Chromosome Location	chr6:37029684-37029685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37013215..37030579-chr6:37135643..37146812,60	K562	blood:
2	chr6:37013215..37030665-chr6:37134901..37148307,66	K562	blood:
3	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
4	chr6:37014868..37029815-chr6:37135131..37143827,44	MCF-7	breast:
5	chr6:37016328..37032410-chr6:37132402..37145966,91	MCF-7	breast:
6	chr6:37028754..37030470-chr6:37049218..37051479,2	K562	blood:
7	chr6:37029336..37032184-chr6:37039647..37042976,3	MCF-7	breast:
8	chr6:37027099..37030994-chr6:37049896..37053173,4	MCF-7	breast:
9	chr6:37026387..37030329-chr6:37076623..37079658,4	K562	blood:
10	chr6:37027012..37030167-chr6:37045267..37048455,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10223714	0.88[ASN][1000 genomes]
rs1224491	0.85[ASN][1000 genomes]
rs1228575	0.86[ASN][1000 genomes]
rs1724094	0.85[ASN][1000 genomes]
rs1753301	0.86[ASN][1000 genomes]
rs2025998	0.86[ASN][1000 genomes]
rs2094575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149336	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317401	0.86[ASN][1000 genomes]
rs4711482	0.86[ASN][1000 genomes]
rs4711483	0.83[ASN][1000 genomes]
rs6457974	0.86[ASN][1000 genomes]
rs6457976	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457978	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457979	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457980	0.88[ASN][1000 genomes]
rs6924660	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939869	0.86[ASN][1000 genomes]
rs7748291	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7750403	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7750614	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750717	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751821	0.88[ASN][1000 genomes]
rs7770544	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7774073	0.86[ASN][1000 genomes]
rs831484	0.86[ASN][1000 genomes]
rs831487	0.86[ASN][1000 genomes]
rs831489	0.86[ASN][1000 genomes]
rs831491	0.86[ASN][1000 genomes]
rs831497	0.83[ASN][1000 genomes]
rs831499	0.83[ASN][1000 genomes]
rs831500	0.83[ASN][1000 genomes]
rs831502	0.80[ASN][1000 genomes]
rs913499	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913500	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9296207	0.81[ASN][1000 genomes]
rs9366927	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380637	0.86[ASN][1000 genomes]
rs9394401	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394402	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394403	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462258	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9470469	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37025400-37029800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:37026600-37029800	Enhancers	Fetal Intestine Small	intestine
3	chr6:37026800-37030000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:37027200-37029800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:37027200-37030400	Enhancers	Adipose Nuclei	Adipose
6	chr6:37027400-37029800	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:37027600-37029800	Enhancers	Fetal Thymus	thymus
8	chr6:37027600-37032400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:37027800-37029800	Enhancers	Fetal Intestine Large	intestine
10	chr6:37028000-37029800	Enhancers	Brain Substantia Nigra	brain
11	chr6:37028000-37030000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:37028200-37030000	Enhancers	HepG2	liver
13	chr6:37028200-37030400	Enhancers	A549	lung
14	chr6:37028200-37030800	Enhancers	K562	blood
15	chr6:37028200-37039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:37028200-37039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:37028400-37030000	Weak transcription	NHDF-Ad	bronchial
18	chr6:37028400-37039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:37028800-37029800	Enhancers	Spleen	Spleen
20	chr6:37029000-37029800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:37029000-37029800	Enhancers	Gastric	stomach
22	chr6:37029200-37029800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:37029200-37029800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:37029200-37029800	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:37029200-37029800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:37029200-37029800	Enhancers	Psoas Muscle	Psoas
27	chr6:37029200-37029800	Enhancers	Right Atrium	heart
28	chr6:37029200-37029800	Enhancers	Thymus	Thymus
29	chr6:37029400-37029800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:37029400-37029800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr6:37029400-37029800	Enhancers	Lung	lung
32	chr6:37029400-37030600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:37029600-37029800	Flanking Active TSS	Liver	Liver
34	chr6:37029600-37032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links