Variant report

Variant	rs6457976
Chromosome Location	chr6:37030755-37030756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37029733..37032417-chr6:37208544..37210313,2	K562	blood:
2	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
3	chr6:37016328..37032410-chr6:37132402..37145966,91	MCF-7	breast:
4	chr6:37029336..37032184-chr6:37039647..37042976,3	MCF-7	breast:
5	chr6:37027099..37030994-chr6:37049896..37053173,4	MCF-7	breast:
6	chr6:37030362..37031958-chr6:37033018..37035477,2	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10223714	0.86[ASN][1000 genomes]
rs1224491	0.83[ASN][1000 genomes]
rs1228575	0.85[ASN][1000 genomes]
rs1724094	0.83[ASN][1000 genomes]
rs1753301	0.85[ASN][1000 genomes]
rs2025998	0.85[ASN][1000 genomes]
rs2094575	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2149336	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4317401	0.85[ASN][1000 genomes]
rs4711482	0.85[ASN][1000 genomes]
rs4711483	0.82[ASN][1000 genomes]
rs6457974	0.85[ASN][1000 genomes]
rs6457978	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457979	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457980	0.86[ASN][1000 genomes]
rs6924660	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939869	0.85[ASN][1000 genomes]
rs7748291	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7750403	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7750614	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7750717	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751821	0.86[ASN][1000 genomes]
rs7770544	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7774073	0.85[ASN][1000 genomes]
rs831484	0.85[ASN][1000 genomes]
rs831487	0.85[ASN][1000 genomes]
rs831489	0.85[ASN][1000 genomes]
rs831491	0.85[ASN][1000 genomes]
rs831497	0.82[ASN][1000 genomes]
rs831499	0.82[ASN][1000 genomes]
rs831500	0.82[ASN][1000 genomes]
rs913499	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs913500	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9296208	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366927	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380637	0.85[ASN][1000 genomes]
rs9394401	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394402	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394403	0.90[ASN][1000 genomes]
rs9462258	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9470469	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37027600-37032400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:37028200-37030800	Enhancers	K562	blood
3	chr6:37028200-37039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:37028200-37039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37028400-37039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:37029600-37032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:37029800-37036400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37029800-37037400	Weak transcription	Spleen	Spleen
10	chr6:37030000-37033800	Weak transcription	HepG2	liver
11	chr6:37030400-37039600	Weak transcription	A549	lung

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