Variant report

Variant	rs7748291
Chromosome Location	chr6:37039564-37039565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37038083..37040728-chr6:37067671..37070819,3	MCF-7	breast:
2	chr6:37025397..37029627-chr6:37037607..37042418,9	MCF-7	breast:
3	chr6:37037124..37041765-chr6:37137125..37140593,5	MCF-7	breast:
4	chr6:37038270..37040946-chr6:37102202..37104279,3	MCF-7	breast:
5	chr6:37036808..37040698-chr6:37041272..37044112,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10223714	0.90[ASN][1000 genomes]
rs1224491	0.83[ASN][1000 genomes]
rs1228575	0.85[ASN][1000 genomes]
rs1724094	0.83[ASN][1000 genomes]
rs1753301	0.85[ASN][1000 genomes]
rs2025998	0.85[ASN][1000 genomes]
rs2094575	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2149336	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317401	0.85[ASN][1000 genomes]
rs4711482	0.85[ASN][1000 genomes]
rs4711483	0.85[ASN][1000 genomes]
rs4714034	0.81[AFR][1000 genomes]
rs6457974	0.85[ASN][1000 genomes]
rs6457976	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457978	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457980	0.90[ASN][1000 genomes]
rs6924660	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939869	0.85[ASN][1000 genomes]
rs7750403	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7750614	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7750717	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751821	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7770544	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7774073	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs831484	0.85[ASN][1000 genomes]
rs831487	0.85[ASN][1000 genomes]
rs831489	0.85[ASN][1000 genomes]
rs831491	0.85[ASN][1000 genomes]
rs831497	0.82[ASN][1000 genomes]
rs831499	0.82[ASN][1000 genomes]
rs831500	0.82[ASN][1000 genomes]
rs913499	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913500	0.88[ASN][1000 genomes]
rs9296208	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366927	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9380637	0.85[ASN][1000 genomes]
rs9380638	0.82[AMR][1000 genomes]
rs9394401	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394402	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394403	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462258	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470469	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37030400-37039600	Weak transcription	A549	lung
3	chr6:37036400-37039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37036600-37041800	Weak transcription	Right Atrium	heart
5	chr6:37036800-37041400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:37037000-37039600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37037000-37041600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:37037200-37042800	Enhancers	HepG2	liver
9	chr6:37037200-37045200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:37037400-37039800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:37037600-37045400	Weak transcription	Spleen	Spleen
12	chr6:37038200-37041200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:37039000-37039600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:37039000-37040000	Enhancers	GM12878-XiMat	blood
15	chr6:37039000-37040200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:37039000-37040800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:37039000-37041200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:37039000-37041200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:37039200-37039600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:37039200-37039800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:37039200-37039800	Enhancers	Fetal Intestine Small	intestine
22	chr6:37039200-37040000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:37039200-37040000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:37039200-37040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:37039200-37040000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:37039200-37040000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:37039200-37040000	Enhancers	Placenta	Placenta
28	chr6:37039200-37040000	Enhancers	Hela-S3	cervix
29	chr6:37039200-37040800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:37039200-37041000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:37039200-37041000	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:37039200-37041200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:37039200-37041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr6:37039200-37041200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:37039200-37042400	Enhancers	K562	blood
36	chr6:37039400-37039600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:37039400-37039600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:37039400-37039600	Enhancers	Fetal Intestine Large	intestine
39	chr6:37039400-37039800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:37039400-37039800	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:37039400-37039800	Enhancers	Fetal Muscle Leg	muscle
42	chr6:37039400-37039800	Enhancers	Fetal Stomach	stomach
43	chr6:37039400-37039800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr6:37039400-37040000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:37039400-37040000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:37039400-37040000	Enhancers	Adipose Nuclei	Adipose
47	chr6:37039400-37040000	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:37039400-37040000	Enhancers	NHDF-Ad	bronchial
49	chr6:37039400-37040000	Enhancers	Osteobl	bone
50	chr6:37039400-37040200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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