Variant report

Variant	rs9380705
Chromosome Location	chr6:11998722-11998723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16872108	0.85[ASN][1000 genomes]
rs58503060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61706528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919575	0.92[ASN][1000 genomes]
rs6928723	0.92[ASN][1000 genomes]
rs7775818	0.85[ASN][1000 genomes]
rs9296224	0.92[ASN][1000 genomes]
rs9296237	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357253	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9366941	0.92[ASN][1000 genomes]
rs9380706	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394442	0.94[ASN][1000 genomes]
rs9394473	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11995400-11999400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:11995600-12001400	Weak transcription	K562	blood
4	chr6:11995600-12007800	Weak transcription	Hela-S3	cervix
5	chr6:11998200-11999200	Weak transcription	HSMMtube	muscle
6	chr6:11998400-11999600	Enhancers	Liver	Liver
7	chr6:11998400-12007800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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