Variant report

Variant	rs9380706
Chromosome Location	chr6:12002920-12002921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16872108	0.85[ASN][1000 genomes]
rs58503060	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61706528	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919575	0.92[ASN][1000 genomes]
rs6928723	0.92[ASN][1000 genomes]
rs7775818	0.85[ASN][1000 genomes]
rs9296224	0.92[ASN][1000 genomes]
rs9296237	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357253	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9366941	0.92[ASN][1000 genomes]
rs9380705	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394442	0.94[ASN][1000 genomes]
rs9394473	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11995600-12007800	Weak transcription	Hela-S3	cervix
3	chr6:11998400-12007800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:11999600-12008400	Weak transcription	Psoas Muscle	Psoas
5	chr6:12001600-12008400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:12001800-12008200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:12001800-12008400	Weak transcription	Osteobl	bone
8	chr6:12002000-12007200	Weak transcription	NHDF-Ad	bronchial
9	chr6:12002000-12008200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:12002000-12008200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:12002200-12007200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:12002200-12008400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:12002200-12008400	Weak transcription	Fetal Brain Female	brain
14	chr6:12002400-12004000	Weak transcription	Fetal Heart	heart
15	chr6:12002600-12003600	Weak transcription	K562	blood
16	chr6:12002600-12007200	Weak transcription	Fetal Lung	lung
17	chr6:12002600-12007200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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