Variant report

Variant	rs9380780
Chromosome Location	chr6:38773709-38773710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38767591..38769178-chr6:38771551..38774399,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12527996	0.87[EUR][1000 genomes]
rs12665115	0.89[EUR][1000 genomes]
rs13196567	0.90[EUR][1000 genomes]
rs34746318	0.87[EUR][1000 genomes]
rs35767740	0.90[EUR][1000 genomes]
rs3823430	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4714180	0.86[EUR][1000 genomes]
rs4714181	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4714182	0.87[EUR][1000 genomes]
rs4714183	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6921238	0.83[EUR][1000 genomes]
rs71571350	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71571354	1.00[AFR][1000 genomes]
rs9357283	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9357284	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9380772	0.87[EUR][1000 genomes]
rs9380777	0.89[EUR][1000 genomes]
rs9380778	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9380779	0.89[EUR][1000 genomes]
rs9380782	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9380784	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9394536	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9394539	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv602959	chr6:38728142-38786528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv462916	chr6:38747770-38782401	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv602960	chr6:38747770-38782401	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38772000-38775200	Enhancers	HUVEC	blood vessel
3	chr6:38772600-38773800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:38773600-38774000	Enhancers	GM12878-XiMat	blood
5	chr6:38773600-38774400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links