Variant report

Variant	rs9380777
Chromosome Location	chr6:38764346-38764347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38762200..38765807-chr6:38769309..38772341,3	K562	blood:
2	chr6:38756316..38758833-chr6:38761826..38764671,2	MCF-7	breast:
3	chr6:38761644..38764833-chr6:38770187..38773339,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12211240	0.97[ASN][1000 genomes]
rs12665115	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13196567	0.82[EUR][1000 genomes]
rs13209006	0.97[ASN][1000 genomes]
rs13209011	0.97[ASN][1000 genomes]
rs34746318	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35767740	0.82[EUR][1000 genomes]
rs35913247	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3823430	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714180	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714181	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714182	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714183	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71571350	0.82[EUR][1000 genomes]
rs7756191	0.95[ASN][1000 genomes]
rs9369082	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9380772	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380775	0.97[ASN][1000 genomes]
rs9380778	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380779	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380780	0.89[EUR][1000 genomes]
rs9380782	0.84[EUR][1000 genomes]
rs9394536	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394539	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv462915	chr6:38728142-38773293	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602959	chr6:38728142-38786528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv462916	chr6:38747770-38782401	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv602960	chr6:38747770-38782401	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38763400-38764400	Enhancers	NHEK	skin
2	chr6:38763400-38768600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:38763600-38764400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38763600-38765200	Enhancers	Fetal Kidney	kidney
5	chr6:38763600-38765400	Enhancers	Fetal Intestine Large	intestine
6	chr6:38763600-38765600	Enhancers	Stomach Mucosa	stomach
7	chr6:38763600-38766800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:38763800-38764600	Flanking Active TSS	K562	blood
9	chr6:38763800-38765000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:38763800-38766000	Enhancers	Fetal Intestine Small	intestine
11	chr6:38764000-38764400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:38764000-38764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:38764000-38764600	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:38764000-38765000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:38764000-38765200	Flanking Active TSS	HUVEC	blood vessel
16	chr6:38764000-38766400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:38764200-38765600	Weak transcription	Pancreas	Pancrea
18	chr6:38764200-38766400	Weak transcription	HMEC	breast

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