Variant report
| Variant | rs9380782 |
|---|---|
| Chromosome Location | chr6:38794912-38794913 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12527996 | 0.92[EUR][1000 genomes] |
| rs12665115 | 0.84[EUR][1000 genomes] |
| rs13196567 | 0.84[EUR][1000 genomes] |
| rs34746318 | 0.82[EUR][1000 genomes] |
| rs35767740 | 0.84[EUR][1000 genomes] |
| rs3823430 | 1.00[CEU][hapmap] |
| rs4714180 | 0.81[EUR][1000 genomes] |
| rs4714181 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs4714182 | 0.82[EUR][1000 genomes] |
| rs4714183 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs6921238 | 0.80[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs6935293 | 1.00[ASW][hapmap] |
| rs71571350 | 0.84[EUR][1000 genomes] |
| rs71571354 | 1.00[AFR][1000 genomes] |
| rs7604 | 1.00[LWK][hapmap] |
| rs9357283 | 0.89[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs9357284 | 0.89[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9366986 | 1.00[LWK][hapmap] |
| rs9380772 | 0.82[EUR][1000 genomes] |
| rs9380777 | 0.84[EUR][1000 genomes] |
| rs9380778 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs9380779 | 0.84[EUR][1000 genomes] |
| rs9380780 | 1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9380784 | 0.89[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs9394536 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs9394539 | 0.84[EUR][1000 genomes] |
| rs9394548 | 0.86[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885817 | chr6:38036420-39019503 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv830642 | chr6:38645056-38800657 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv830643 | chr6:38726675-38905589 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:38766800-38824400 | Weak transcription | K562 | blood |
| 2 | chr6:38793400-38797400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
