Variant report

Variant	rs9383018
Chromosome Location	chr6:15082132-15082133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12215015	0.85[AFR][1000 genomes]
rs4712249	0.85[AFR][1000 genomes]
rs6459394	0.82[AFR][1000 genomes]
rs6459395	0.85[ASN][1000 genomes]
rs6459399	0.85[ASN][1000 genomes]
rs67484865	0.85[ASN][1000 genomes]
rs6908054	0.85[ASN][1000 genomes]
rs6919665	0.80[AMR][1000 genomes]
rs6924703	0.90[ASN][1000 genomes]
rs6928595	0.90[ASN][1000 genomes]
rs7747995	0.85[AFR][1000 genomes]
rs9296965	0.89[ASN][1000 genomes]
rs9296966	0.89[ASN][1000 genomes]
rs9383019	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078600-15082600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15078600-15083200	Enhancers	Fetal Intestine Large	intestine
6	chr6:15078600-15083800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15080200-15083800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
12	chr6:15081400-15082200	Enhancers	Fetal Intestine Small	intestine
13	chr6:15082000-15082600	Enhancers	K562	blood
14	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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